1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GCCTTCTTCTCTGGTAATGCTGCTGCTCTGGCTTCAAGGAAGTCTTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCTgtgagtgcttttatttcaactgccctttttgttaacttggatatgttgtaatatttattctgctgttactcatggcttcttttctttcctctcag
species | Glycine max |
transcript | GLYMA16G04240.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CGAGGCTGTTCAGAAGGCT GCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCCEST: gi|8670420|gb|BE191527.1|BE191527
genomic: CGAGGCTGTTCAGAAGGCTgtgagtgctt ... ttcctctcagGCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCC
EST: CTTCAAGGAAGTCTTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCT GCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCCEST: gi|8669740|gb|BE190847.1|BE190847
genomic: CTTCAAGGAAGTCTTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCTgtgagtgctt ... ttcctctcagGCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCC
EST: CTTCAAGGAAGTCTTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCT GCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCCEST: gi|14258702|gb|BG881610.1|BG881610
genomic: CTTCAAGGAAGTCTTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCTgtgagtgctt ... ttcctctcagGCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCC
EST: CCAAGAGTGACCAACGAGGCTGTTCAGAAGGCT GCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCCEST: gi|16105053|gb|BI892793.1|BI892793
genomic: CCAAGAGTGACCAACGAGGCTGTTCAGAAGGCTgtgagtgctt ... ttcctctcagGCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCC
EST: CTTCAAGGAAGTCTTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCT GCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCCEST: gi|22522024|gb|BU080835.1|BU080835
genomic: CTTCAAGGAAGTCTTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCTgtgagtgctt ... ttcctctcagGCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCC
EST: CTTCAAGGAAGTCTTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCT GCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCCEST: gi|23728244|gb|BU762169.1|BU762169
genomic: CTTCAAGGAAGTCTTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCTgtgagtgctt ... ttcctctcagGCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCC
EST: CTTCAAGGAAGTCTTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCT GCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCCEST: gi|22521984|gb|BU080795.1|BU080795
genomic: CTTCAAGGAAGTCTTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCTgtgagtgctt ... ttcctctcagGCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCC
EST: CTTCAAGGAAGTCTTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCT GCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCCEST: gi|9564613|gb|BE474122.1|BE474122
genomic: CTTCAAGGAAGTCTTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCTgtgagtgctt ... ttcctctcagGCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCC
EST: CTTCAAGGAAGTCTTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCT GCTGCTGCATTGAANGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCCEST: gi|213603185|gb|DB981039.1|DB981039
genomic: CTTCAAGGAAGTCTTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCTgtgagtgctt ... ttcctctcagGCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCC
EST: CTTCAAGGAAGTCTTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCT GCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCCEST: gi|192333042|gb|FK024691.1|FK024691
genomic: CTTCAAGGAAGTCTTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCTgtgagtgctt ... ttcctctcagGCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCC
EST: CTTCAAGGAAGTCTTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCT GCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCCEST: gi|192333296|gb|FK026177.1|FK026177
genomic: CTTCAAGGAAGTCTTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCTgtgagtgctt ... ttcctctcagGCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCC
EST: CTTCAAGGAAGTCTTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCT GCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCCEST: gi|213615221|gb|DB965029.1|DB965029
genomic: CTTCAAGGAAGTCTTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCTgtgagtgctt ... ttcctctcagGCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCC
EST: CTTCAAGGAAGTCTTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCT GCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCCEST: gi|12689966|gb|BG156302.1|BG156302
genomic: CTTCAAGGAAGTCTTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCTgtgagtgctt ... ttcctctcagGCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCC
EST: CTTCAAGGAAGTCTTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCT GCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCCEST: gi|9258931|gb|BE347078.1|BE347078
genomic: CTTCAAGGAAGTCTTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCTgtgagtgctt ... ttcctctcagGCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCC
EST: CTTCAAGGAAGTCTTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCT GCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCCEST: gi|7640038|gb|AW734347.1|AW734347
genomic: CTTCAAGGAAGTCTTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCTgtgagtgctt ... ttcctctcagGCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCC
EST: CTTCAAGGAAGTCTTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCT GCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCCEST: gi|209727264|gb|BW663210.1|BW663210
genomic: CTTCAAGGAAGTCTTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCTgtgagtgctt ... ttcctctcagGCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCC
EST: CTTCAAGGAAGTCTTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCT GCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCCEST: gi|9204537|gb|BE330761.1|BE330761
genomic: CTTCAAGGAAGTCTTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCTgtgagtgctt ... ttcctctcagGCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCC
EST: CTTCAAGGAAGTCTTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCT GCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCCEST: gi|15286256|gb|BI470147.1|BI470147
genomic: CTTCAAGGAAGTCTTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCTgtgagtgctt ... ttcctctcagGCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCC
EST: CTTCAAGGAAGTTTTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCT GCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCCEST: gi|15814229|gb|BI786504.1|BI786504
genomic: CTTCAAGGAAGTCTTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCTgtgagtgctt ... ttcctctcagGCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCC
EST: CTTCAAGGAAGTCTTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCT GCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCCEST: gi|10846169|gb|BF069133.1|BF069133
genomic: CTTCAAGGAAGTCTTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCTgtgagtgctt ... ttcctctcagGCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCC
EST: CTTCAAGGAAGTCTTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCT GCTGCTGCATTGAAAGGTTCAGATCATCGCCGTGCAACACATGTCAGTGCCEST: gi|9259682|gb|BE347829.1|BE347829
genomic: CTTCAAGGAAGTCTTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCTgtgagtgctt ... ttcctctcagGCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCC
EST: CTTCAAGGAAGTCTTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCT GCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCCEST: gi|15286907|gb|BI470798.1|BI470798
genomic: CTTCAAGGAAGTCTTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCTgtgagtgctt ... ttcctctcagGCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCC
EST: CTTCAAGGAAGTCTTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCT GCCG-TCGTATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCEST: gi|26048073|gb|CA784670.1|CA784670
genomic: CTTCAAGGAAGTCTTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCTgtgagtgctt ... ttcctctcagGCTGCT-GCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGC
EST: CTTCAAGGAAGTCTTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCT GCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCCEST: gi|7588477|gb|AW704334.1|AW704334
genomic: CTTCAAGGAAGTCTTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCTgtgagtgctt ... ttcctctcagGCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCC
EST: CTTCAAGGAAGTCTTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCT GCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCCEST: gi|13252819|gb|BG363722.1|BG363722
genomic: CTTCAAGGAAGTCTTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCTgtgagtgctt ... ttcctctcagGCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCC
EST: CTTCAAGGAAGTCTTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCT GCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCCEST: gi|6502045|gb|AW203418.1|AW203418
genomic: CTTCAAGGAAGTCTTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCTgtgagtgctt ... ttcctctcagGCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCC
EST: CTTCAAGGAAGTCTTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCT GCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCCEST: gi|6454893|gb|AW185503.1|AW185503
genomic: CTTCAAGGAAGTCTTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCTgtgagtgctt ... ttcctctcagGCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCC
EST: TCAAGGAAAG-CTTCTCCAAGAGTGACCA-CGGAGGCTGT-CAGAAGGCT GCTGCTGCAATTGAAGGGTEST: gi|20815113|gb|BQ299591.1|BQ299591
genomic: TCAAGGAA-GTCTTCTCCAAGAGTGACCAACG-AGGCTGTTCAGAAGGCTgtgagtgctt ... ttcctctcagGCTGCTGCA-TTGAAGGGT
EST: CTTCAAGGAAGTCTTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCT GCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCCEST: gi|9820119|gb|BE555629.1|BE555629
genomic: CTTCAAGGAAGTCTTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCTgtgagtgctt ... ttcctctcagGCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCC
EST: CTTCAAGGAAGTCTTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCT GCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCCEST: gi|26057207|gb|CA800121.1|CA800121
genomic: CTTCAAGGAAGTCTTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCTgtgagtgctt ... ttcctctcagGCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCC
EST: CTTCAAGGAAGTCTTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCT GCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCCEST: gi|7924713|gb|AW830739.1|AW830739
genomic: CTTCAAGGAAGTCTTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCTgtgagtgctt ... ttcctctcagGCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCC
EST: CTTCAAGGAAGTCTTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCT GCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCCEST: gi|13477481|gb|BG507350.1|BG507350
genomic: CTTCAAGGAAGTCTTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCTgtgagtgctt ... ttcctctcagGCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCC
EST: CTTCAAGGAAGTCTTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCT GCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCC
genomic: CTTCAAGGAAGTCTTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCTgtgagtgctt ... ttcctctcagGCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCTTCTTCTCTGGTAATGCTGCTGCTCTGGCTTCAAGGAAGTCTTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCTgtgagtgcttttatttcaactgccctttttgttaacttggatatgttgtaatatttattctgctgttactcatggcttcttttctttcctctcag
- - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT