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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTGCACCAGATGGTGGAAATGGAATTTCCAGATCGCTGGATCAAATTCAGTGGAATTTTAGCTTATCTGATCTAACGGCTGATTTGCCAAACTTGGGAGgtaatttcttgtttgactctctgattcacttttaggtatgcagttaaagttagtttgatgtcatcgtagagtgaagttgtttgagatgtacaacatgtgt...

Basic information

species Glycine max
transcript GLYMA16G02860.2
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6482602|gb|AW201847.1|AW201847
EST:     GTGGAATTTTAGCTTATCTGATCTAACGGCTGATTTGCCAAACTTGGGAG                         ATCTAGGAGCTCTGGGAAACTATCCTGGTTCACCATTTTTGCCATCTGATT
genomic: GTGGAATTTTAGCTTATCTGATCTAACGGCTGATTTGCCAAACTTGGGAGgtaatttctt ... ttctttgcagATCTAGGAGCTCTGGGAAACTATCCTGGTTCACCATTTTTGCCATCTGATT
EST: gi|22928262|gb|BU545401.1|BU545401
EST:     GTGGAATTTTAGCTTATCTGATCTAACGGCTGATTTGCCAAACTTGGGAG                         ATCTAGGAGCTCTGGGAAACTATCCTGGTTCACCATTTTTGCCATCTGATT
genomic: GTGGAATTTTAGCTTATCTGATCTAACGGCTGATTTGCCAAACTTGGGAGgtaatttctt ... ttctttgcagATCTAGGAGCTCTGGGAAACTATCCTGGTTCACCATTTTTGCCATCTGATT
EST: gi|22928383|gb|BU545522.1|BU545522
EST:     GTGGAATTTTAGCTTATCTGATCTAACGGCTGATTTGCCAAACTTGGGAG                         ATCTAGGAGCTCTGGGAAACTATCCTGGTTCACCATTTTTGCCATCTGATT
genomic: GTGGAATTTTAGCTTATCTGATCTAACGGCTGATTTGCCAAACTTGGGAGgtaatttctt ... ttctttgcagATCTAGGAGCTCTGGGAAACTATCCTGGTTCACCATTTTTGCCATCTGATT
EST: gi|9204434|gb|BE330658.1|BE330658
EST:     CTGGAATTATAGCTTATCTGATCTAACGGCTGATTTGCCAAACTTGGGAG                         ATCTATGAGCTCTGGGAAACTATCCTGG
genomic: GTGGAATTTTAGCTTATCTGATCTAACGGCTGATTTGCCAAACTTGGGAGgtaatttctt ... ttctttgcagATCTAGGAGCTCTGGGAAACTATCCTGG
EST: gi|9564325|gb|BE473834.1|BE473834
EST:     GTGGAATTTTAGCTTATCTGATCTAACGGCTGATTTGCCAAACTTGGGAG                         ATCTAGGAGCTCTGGGAAACTATCCTGGTTCACCATTTTTGCCATCTGATT
genomic: GTGGAATTTTAGCTTATCTGATCTAACGGCTGATTTGCCAAACTTGGGAGgtaatttctt ... ttctttgcagATCTAGGAGCTCTGGGAAACTATCCTGGTTCACCATTTTTGCCATCTGATT
EST: gi|58020902|gb|CX707644.1|CX707644
EST:     GTGGAATTTTAGCTTATCTGATCTAACGGCTGATTTGCCAAACTTGGGAG                         ATCTAGGAGCTCTGGGAAACTATCCTGGTTCACCATTTTTGCCATCTGATT
genomic: GTGGAATTTTAGCTTATCTGATCTAACGGCTGATTTGCCAAACTTGGGAGgtaatttctt ... ttctttgcagATCTAGGAGCTCTGGGAAACTATCCTGGTTCACCATTTTTGCCATCTGATT
EST: gi|58020559|gb|CX707301.1|CX707301
EST:     GTGGAATTTTAGCTTATCTGATCTAACGGCTGATTTGCCAAACTTGGGAG                         ATCTAGGAGCTCTGGGAAACTATCCTGGTTCACCATTTTTGCCATCTGATT
genomic: GTGGAATTTTAGCTTATCTGATCTAACGGCTGATTTGCCAAACTTGGGAGgtaatttctt ... ttctttgcagATCTAGGAGCTCTGGGAAACTATCCTGGTTCACCATTTTTGCCATCTGATT
EST: gi|58020730|gb|CX707472.1|CX707472
EST:     GTGGAATTTTAGCTTATCTGATCTAACGGCTGATTTGCCAAACTTGGGAG                         ATCTAGGAGCTCTGGGAAACTATCCTGGTTCACCATTTTTGCCATCTGATT
genomic: GTGGAATTTTAGCTTATCTGATCTAACGGCTGATTTGCCAAACTTGGGAGgtaatttctt ... ttctttgcagATCTAGGAGCTCTGGGAAACTATCCTGGTTCACCATTTTTGCCATCTGATT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTTGCACCAGATGGTGGAAATGGAATTTCCAGATCGCTGGATCAAATTCAGTGGAATTTTAGCTTATCTGATCTAACGGCTGATTTGCCAAACTTGGGAGgtaatttcttgtttgactctctgattcacttttaggtatgcagttaaagttagtttgatgtcatcgtagagtgaagttgtttgagatgtacaacatgtgt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT