1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TGATGGATTTAGAGTGACAGATTCTCATCGCTCCAGTCAAAGAGAAGCAGCACTAGTGAAGTTTCGACTGAAGCGGAAAGAGAGATGCTTCGAGAAAAAGgtatcataaacagcacttagtaaaaggctactttaagattatttatggtgaatttatatctatgattgcagttggcttggaaactcctatagcatgtttcactaaagatcttattaacaagtactctaatttcttgtatag
species | Glycine max |
transcript | GLYMA16G02050.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CACTAGTGAAGTTTCGACTGAAGCGGAAAGAGAGATGCTTCGAGAAAAAG GTTCGATATCAAAGCCGGAAAAGACTGGCAGAGCAGCGGCCTCGGGTGAAGEST: gi|209705226|gb|BW673766.1|BW673766
genomic: CACTAGTGAAGTTTCGACTGAAGCGGAAAGAGAGATGCTTCGAGAAAAAGgtatcataaa ... tcttgtatagGTTCGATATCAAAGCCGGAAAAGACTGGCAGAGCAGCGGCCTCGGGTGAAG
EST: CACTAGTGAAGTTTCGACTGAAGCGGAAAGAGAGATGCTTCGAGAAAAAG GTTCGATATCAAAGCCGGAAAAGACTGGCAGAGCAGCGGCCTCGGGTGAAGEST: gi|15000985|gb|BI321799.1|BI321799
genomic: CACTAGTGAAGTTTCGACTGAAGCGGAAAGAGAGATGCTTCGAGAAAAAGgtatcataaa ... tcttgtatagGTTCGATATCAAAGCCGGAAAAGACTGGCAGAGCAGCGGCCTCGGGTGAAG
EST: CACTAGTGAAGTTTCGACTGAAGCGGAAAGAGAGATGCTTCGAGAAAAAG GTTCGATATCAAAGCCGGAAAAGACTGGCAGAGCAGCGGCCTCGGGTGAAGEST: gi|31311707|gb|CD396910.1|CD396910
genomic: CACTAGTGAAGTTTCGACTGAAGCGGAAAGAGAGATGCTTCGAGAAAAAGgtatcataaa ... tcttgtatagGTTCGATATCAAAGCCGGAAAAGACTGGCAGAGCAGCGGCCTCGGGTGAAG
EST: CACTAGTGAAGTTTCGACTGAAGCGGAAAGAGAGATGCTTCGAGAAAAAG GTTCGATATCAAAGCCGGAAAAGACTGGCAGAGCAGCGGCCTCGGGTGAAGEST: gi|10844204|gb|BF067526.1|BF067526
genomic: CACTAGTGAAGTTTCGACTGAAGCGGAAAGAGAGATGCTTCGAGAAAAAGgtatcataaa ... tcttgtatagGTTCGATATCAAAGCCGGAAAAGACTGGCAGAGCAGCGGCCTCGGGTGAAG
EST: CACTAGTGAAGTTTCGACTGAAGCGGAAAGAGAGATGCTTCGAGAAAAAG GTTCGATATCAAAGCCGGAAAAGACTGGCAGAGCAGCGGCCTCGGGTGAAG
genomic: CACTAGTGAAGTTTCGACTGAAGCGGAAAGAGAGATGCTTCGAGAAAAAGgtatcataaa ... tcttgtatagGTTCGATATCAAAGCCGGAAAAGACTGGCAGAGCAGCGGCCTCGGGTGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGATGGATTTAGAGTGACAGATTCTCATCGCTCCAGTCAAAGAGAAGCAGCACTAGTGAAGTTTCGACTGAAGCGGAAAGAGAGATGCTTCGAGAAAAAGgtatcataaacagcacttagtaaaaggctactttaagattatttatggtgaatttatatctatgattgcagttggcttggaaactcctatagcatgtttcactaaagatcttattaacaagtactctaatttcttgtatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG