1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GGCTAATAGGACTGATGCTTGTTTTATAAGGGTTATTGGAAGTGAGCTAGTTCAGAAATATGTCGGTGAGGGGGCTAGGATGGTTCGTGAACTATTTCAGgtaaatacataagacgtgccttctagcttttgatcgttgtttccatgaaattcaatcatttgactaaaattttatctcttgtag
species | Glycine max |
transcript | GLYMA16G01810.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TTCAGAAATATGTCGGTGAGGGGGCTAGGATGGTTCGTGAACTATTTCAG ATGGCTCGTTCAAAGAAGGCATGCATTGTGTTTTTTGATGAAGTTGATGCAEST: gi|18039872|gb|BM308166.1|BM308166
genomic: TTCAGAAATATGTCGGTGAGGGGGCTAGGATGGTTCGTGAACTATTTCAGgtaaatacat ... tctcttgtagATGGCTCGTTCAAAGAAGGCATGCATTGTGTTTTTTGATGAAGTTGATGCA
EST: TTCAGAAATATGTCGGTGAGGGGGCTAGGATGGTTCGTGAACTATTTCAG ATGGCTCGTTCAAAGAAGGCATGCATTGTGTTTTTTGATGAAGTTGATGCAEST: gi|19268833|gb|BM885089.1|BM885089
genomic: TTCAGAAATATGTCGGTGAGGGGGCTAGGATGGTTCGTGAACTATTTCAGgtaaatacat ... tctcttgtagATGGCTCGTTCAAAGAAGGCATGCATTGTGTTTTTTGATGAAGTTGATGCA
EST: TTCAGAAATATGTTGGTGAGGGGGCTAGGATGGTTCGTGAACTATTTCAG ATGGCTCGTTCAAAGAAGGCATGCATTGTGTTTTTTGATGAAGTTGATGCAEST: gi|207816388|gb|GD787915.1|GD787915
genomic: TTCAGAAATATGTCGGTGAGGGGGCTAGGATGGTTCGTGAACTATTTCAGgtaaatacat ... tctcttgtagATGGCTCGTTCAAAGAAGGCATGCATTGTGTTTTTTGATGAAGTTGATGCA
EST: TTCAGAAATATGTTGGTGAGGGGGCTAGGATGGTTCGTGAACTATTTCAG ATGGCTCGTTCAAAGAAGGCATGCATTGTGTTTTTTGATGAAGTTGATGCAEST: gi|17963522|gb|BM270270.1|BM270270
genomic: TTCAGAAATATGTCGGTGAGGGGGCTAGGATGGTTCGTGAACTATTTCAGgtaaatacat ... tctcttgtagATGGCTCGTTCAAAGAAGGCATGCATTGTGTTTTTTGATGAAGTTGATGCA
EST: TTCAGAAATATGTCGGTGAGGGGGCTAGGATGGTTCGTGAACTATTTCAG ATGGCTCGTTCAAAGAAGGCATGCATTGTGTTTTTTGATGAAGTTGATGCAEST: gi|298174191|gb|HO017527.1|HO017527
genomic: TTCAGAAATATGTCGGTGAGGGGGCTAGGATGGTTCGTGAACTATTTCAGgtaaatacat ... tctcttgtagATGGCTCGTTCAAAGAAGGCATGCATTGTGTTTTTTGATGAAGTTGATGCA
EST: TATGTCGGTGAGGGGGCTAGGATGGTTCGTGAACTATTTCAG ATGGCTCGTTCAAAGAAGGCATGCATTGTGTTTTTTGATGAAGTTGATGCAEST: gi|193479172|gb|FK446645.1|FK446645
genomic: TATGTCGGTGAGGGGGCTAGGATGGTTCGTGAACTATTTCAGgtaaatacat ... tctcttgtagATGGCTCGTTCAAAGAAGGCATGCATTGTGTTTTTTGATGAAGTTGATGCA
EST: TTCAGAAATATGTCGGTGAGGGGGCTAGGATGGTTCGTGAACTATTTCAG ATGGCTCGTTCAAAGAAGGCATGCATTGTGTTTTTTGAEST: gi|254319386|gb|GR829006.1|GR829006
genomic: TTCAGAAATATGTCGGTGAGGGGGCTAGGATGGTTCGTGAACTATTTCAGgtaaatacat ... tctcttgtagATGGCTCGTTCAAAGAAGGCATGCATTGTGTTTTTTGA
EST: TTCAGAAATATGTCGGTGAGGGGGCTAGGATGGTTCGTGAACTATTTCAG ATGGCTCGTTCAA-GA-GGCATGCATTGGTGTTTTTTGATGAAGTTGATGCEST: gi|298171740|gb|HO021332.1|HO021332
genomic: TTCAGAAATATGTCGGTGAGGGGGCTAGGATGGTTCGTGAACTATTTCAGgtaaatacat ... tctcttgtagATGGCTCGTTCAAAGAAGGCATGCATTG-TGTTTTTTGATGAAGTTGATGC
EST: TTCAGAAATATGTCGGTGAGGGGGCTAGGATGGTTCGTGAACTATTTCAG ATGGCTCGTTCAAAGAAGGCATGCATTGTGTTTTTTGATGAAGTTGATGCAEST: gi|193590240|gb|FK545268.1|FK545268
genomic: TTCAGAAATATGTCGGTGAGGGGGCTAGGATGGTTCGTGAACTATTTCAGgtaaatacat ... tctcttgtagATGGCTCGTTCAAAGAAGGCATGCATTGTGTTTTTTGATGAAGTTGATGCA
EST: TAGGATGGTTCGTGAACTGTTTCAG ATGGCTCGTTCAAAGAAGGCATGCATTGTGTTTTTTGATGAAGTTGATGCA
genomic: TAGGATGGTTCGTGAACTATTTCAGgtaaatacat ... tctcttgtagATGGCTCGTTCAAAGAAGGCATGCATTGTGTTTTTTGATGAAGTTGATGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCTAATAGGACTGATGCTTGTTTTATAAGGGTTATTGGAAGTGAGCTAGTTCAGAAATATGTCGGTGAGGGGGCTAGGATGGTTCGTGAACTATTTCAGgtaaatacataagacgtgccttctagcttttgatcgttgtttccatgaaattcaatcatttgactaaaattttatctcttgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG