1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
GGATCTCTCGTTCAATTCTTTGACAGGTGACCTGCCTCAGACTATGAGCTCACTTTCTAGCATAAGAACCATgtaaatgtctaacttttctttttctttttccatttttctgcttatatttacatggcattgattacattctgagttgacttgttcacaattatgtag
species | Glycine max |
transcript | GLYMA16G01790.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: ACAGGTGACCTGCCTCAGACTATGAGCTCACTTTCTAGCATAAGAACCAT GTATCTGCAAAACAACCAGTTTACAGGCACCATTGATGTCCTTGCTAATCTEST: gi|208341439|gb|GE139065.1|GE139065
genomic: ACAGGTGACCTGCCTCAGACTATGAGCTCACTTTCTAGCATAAGAACCATgtaaatgtct ... aattatgtagGTATCTGCAAAACAACCAGTTTACAGGCACCATTGATGTCCTTGCTAATCT
EST: TGACCTGCCTTCTAGTACTTATGTAGCTCACTTTCTAGCATAAGAACCAT GTATCTGCAAAACAACCAGTTTACAGGCACCATTGATGTCCTTGCTAATCTEST: gi|213603106|gb|DB960411.1|DB960411
genomic: TGACCTGCC-TC-AG-AC-TATG-AGCTCACTTTCTAGCATAAGAACCATgtaaatgtct ... aattatgtagGTATCTGCAAAACAACCAGTTTACAGGCACCATTGATGTCCTTGCTAATCT
EST: ACAGGTGACCTGCCTCAGACTATGAGCTCACTTTCTAGCATAAGAACCAT GTATCTGCAAAACAACCAGTTTACAGGCACCATTGATGTCCTTGCTAATCTEST: gi|208306809|gb|GE107940.1|GE107940
genomic: ACAGGTGACCTGCCTCAGACTATGAGCTCACTTTCTAGCATAAGAACCATgtaaatgtct ... aattatgtagGTATCTGCAAAACAACCAGTTTACAGGCACCATTGATGTCCTTGCTAATCT
EST: ACAGGTGACCTGCCTCAGACTATGAGCTCACTTTCTAGCATAAGAACCAT GTATCTGCAAAACAACCAGTTTACAGGCACCATTGATGTCCTTGCTAATCT
genomic: ACAGGTGACCTGCCTCAGACTATGAGCTCACTTTCTAGCATAAGAACCATgtaaatgtct ... aattatgtagGTATCTGCAAAACAACCAGTTTACAGGCACCATTGATGTCCTTGCTAATCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGATCTCTCGTTCAATTCTTTGACAGGTGACCTGCCTCAGACTATGAGCTCACTTTCTAGCATAAGAACCATgtaaatgtctaacttttctttttctttttccatttttctgcttatatttacatggcattgattacattctgagttgacttgttcacaattatgtag
- - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC