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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCATCCAGAAAGTTGGAATCCCATGTGGTCTGTATCAAGgtcagaaagttttagttgtgaagttcttttatttatattatatggttaatggtttaccatgtttggttttttacttttttatttatcctttgacttttgcatgaggaattgatatctgtgaataacaataaatgtggattattattactttatagctttatactgatgttttcaatttccgaatgcag

Basic information

species Glycine max
transcript GLYMA16G01680.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G01680.1 (Glycine max), 5'ss of exon 7
lower sequence: AT5G50430.2 (Arabidopsis thaliana), 5'ss of exon 7
TTCATCCAGAAAGTTGGAATCCCATGTGGTCTGTATCAAGgtcagaaagttttagttgtgaagttcttttatttatattat-atggttaatggtttaccatgtttggttttttacttttttatttatcctttgacttttgcatgaggaattgatatctgtgaataacaataaatgtggattattattactttatagctttatactgatgttttcaatttccgaatgcag
||||||||||||| |||||||| |||||||| || ||||||| | ||  | | |  |         || | || |  |||| |   | ||  |  ||    | |   | ||| ||   ||| |||   |  |||     |                                                                                         
TTCATCCAGAAAGCTGGAATCCAATGTGGTCAGTGTCAAGgt-ataagatctgatgtacattcaaattgtgttcaagttattaaaataaacagagtaatg-gatccttatttgaccaatttgttt---ccctgaacgcag-----------------------------------------------------------------------------------------

upper sequence: GLYMA16G01680.1 (Glycine max), 5'ss of exon 7
lower sequence: AT1G17280.1 (Arabidopsis thaliana), 5'ss of exon 7
TTCATCCAGAAAGTTGGAATCCCATGTGGTCTGTATCAAGgtcagaaagttttagttgtgaagttcttttatttatattatatggttaatggtttaccatgtttggttttttacttttttatttatcctttgacttttgcatgaggaattgatatctgtgaataacaataaatgtggattattattactttatagctttatactgatgttttcaatttccgaatgcag
||||||||||||| |||||||| |||||||||||||||||||   | || ||           ||  |||| || |   | |||   |  | | ||||    ||| |     ||||||||   |       |                                                                                                
TTCATCCAGAAAGCTGGAATCCGATGTGGTCTGTATCAAGgt---atagattc----------tttctttacttttggaagatgacaatcgatatacccg--ttgataaccaactttttttcatgaatgcag------------------------------------------------------------------------------------------------

upper sequence: GLYMA16G01680.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv09s0002g00280.t01 (Vitis vinifera), 5'ss of exon 8
TTCATCCAGAAAGTTGGAATCCCATGTGGTCTGTATCAAGgtcagaaagttttagttgtgaagttcttttatttatattatatggttaatggtttaccatgtttggttttttacttttttatttatcctttgacttttgcatgaggaattgatatctgtgaataacaataaatgtggattattattactttatagctttatactgatgttttcaatttccgaatgcag
||||||||||||| ||||| || ||||||||||||||||||| ||| ||        |  ||| | | ||||  |    |  || || |||  ||| |        |||| |  | ||| || || ||||     |||| |  |  | | | | | ||| |  || |                                                             
TTCATCCAGAAAGCTGGAACCCAATGTGGTCTGTATCAAGgtaagacaga-------gccaagatttcttatacacgacacttgttttatg--ttatc--------ttttctgttatttaatatagcctt-----tttgaactaaca-tggttgtatgttacaaatacag----------------------------------------------------------

upper sequence: GLYMA16G01680.1 (Glycine max), 5'ss of exon 7
lower sequence: PP1S366_17V6.1 (Physcomitrella patens), 5'ss of exon 6
TTCATCCAGAAAGTTGGAATCCCATGTGGTCTGTATCAAGgtcagaaagttttagttgtgaagttcttttatttatattatatggttaatggtttaccatgtttggtt--ttttacttttttatttatcctttgacttttgc---atgaggaattgatatctgtg-aataacaataaatgt------ggattattattactttatagctttatactgatgttttcaatttccgaatgcag
|||||||||| | ||||||||| ||||||||||| |||||||       |||| |||    | || | |||| | | || | |   |||||  ||    |  | |  |  |||||||   ||||      |    || ||||    |  |  ||| || | | |  || | |  |  ||||      ||||| | || | | |  |  |  |    |||   | |  |||    ||||||
TTCATCCAGAGACTTGGAATCCAATGTGGTCTGTTTCAAGgt------atttttgtt---cacttttattatctctgttgtctttctaatgagttttgcttctggactgattttactacattatgagatttcactctcttgccttgtacgttattaatgtttttccaacagcttttgatgttcttttggattctcatcattgtcaacttacaatacgattgatcctgttt---gatgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192307581|gb|FG999620.1|FG999620
EST:     TTCATCCAGAAAGTTGGAATCCCATGTGGTCTGTATCAAG                         CATATTAACAGGGCTTCTTTCATTCGTG
genomic: TTCATCCAGAAAGTTGGAATCCCATGTGGTCTGTATCAAGgtcagaaagt ... ccgaatgcagCATATTAACAGGGCTTCTTTCATTCATG
EST: gi|15661834|gb|BI699205.1|BI699205
EST:     TTCATCCAGAAAGTTGGAATCCCATGTGGTCTGTATCAAG                         CATATTAACAGGGCTTCTTTCATTCATG
genomic: TTCATCCAGAAAGTTGGAATCCCATGTGGTCTGTATCAAGgtcagaaagt ... ccgaatgcagCATATTAACAGGGCTTCTTTCATTCATG