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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGAACTGTATGTGAGAGGTCCCATCTCTTTCGAATTAAATACTATGGCAGCTTTGATAAACCATTGGGTCGATTTCTGCGGGACCATTTATTTGATCAGgtaattgtctgttctaggaataaatatgtctttgttatttgaactatggcactagtttttacagttgttgtcattacttttcag

Basic information

species Glycine max
transcript GLYMA16G01590.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G01590.1 (Glycine max), 5'ss of exon 7
lower sequence: AT3G14270.1 (Arabidopsis thaliana), 5'ss of exon 6
GGGAACTGTATGTGAGAGGTCCCATCTCTTTCGAATTAAATACTATGGCAGCTTTGATAAACCATTGGGTCGATTTCTGCGGGACCATTTATTTGATCAGgtaa------ttgtctgttctaggaataaatatgtctttgttatttgaactatggcactagtt-----tttacagttgttgtcattactttt-cag
 |||||||| ||||| ||||| ||||||||||| || ||||||||||| || ||||||||||| ||||| || ||  || | || ||||| || |||||||| |      || | | || |     |  ||| | | |   ||||  | ||     | || ||       || |    |  |||  |||||| |||
AGGAACTGTGTGTGAAAGGTCTCATCTCTTTCGGATAAAATACTATGGTAGTTTTGATAAACCCTTGGGACGGTTCTTGAGAGATCATTTGTTCGATCAGgtgagttattttcttttttgttttgttttataagacatctatattacagcttcaataataattagaaacctaaatgcatgctcaaaactttttcag

upper sequence: GLYMA16G01590.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv09s0002g00380.t01 (Vitis vinifera), 5'ss of exon 7
GGGAACTGTATGTGAGAGGTCCCATCTCTTTCGAATTAAATACTATGGCAGCTTTGATAAACCATTGGGTCGATTTCTGCGGGACCATTTATTTGATCAGgtaat-tgtctgttctaggaataaatatgtctttgttatttgaactatggcactagtttttacagttgttgtcattacttttcag
||| ||||| ||||| ||||||||||||||||| || ||||||||||||| |||||||||||| ||||| || ||||| || ||||||||||||||||||||||  | ||||||      ||    |     |   ||    |  | |  || |   |   || |  |  | | ||  || ||||
GGGGACTGTCTGTGAAAGGTCCCATCTCTTTCGCATCAAATACTATGGCAACTTTGATAAACCTTTGGGGCGGTTTCTACGAGACCATTTATTTGATCAGgtaaggtttctgtttctcacattttcactctctcaataaa-aacttgtaacattctgtaagactgaggaagcctttg-ttatcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254315776|gb|GR825585.1|GR825585
EST:     GCTTTGATAAACCATTGGGTCGATTTCTGCGGGACCATTTATTTGATCAG                         AGTTATCAATGCCATTCTTGTGAAATGCCATCGGAAGCACATGTGCATTGC
genomic: GCTTTGATAAACCATTGGGTCGATTTCTGCGGGACCATTTATTTGATCAGgtaattgtct ... tacttttcagAGTTATCAATGCCATTCTTGTGAAATGCCATCGGAAGCACATGTGCATTGC