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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGATGCTAGGGTTATGTGGGATCAGAAGACTGGGCGTTCAAGGGGATTTGGATTTGTTTCATTCCGTAATCAACAGgtccaaatttggttttataatcttaatttttggtgtgacaaggctctttattatggttttgacttagatttttcttgaatttttgtag

Basic information

species Glycine max
transcript GLYMA16G01230.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G01230.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os11g40510.1 (Oryza sativa), 5'ss of exon 7
AGATGCTAGGGTTATGTGGGATCAGAAGACTGGGCGTTCAAGGGGATTTGGATTTGTTTCATTCCGTAATCAACAGgtccaaatttggttttataatcttaatttttggt--gtgacaaggctctttattatggttttgacttag-atttttcttgaatttttgtag
|||||||||||| |||||||||||||| ||||| || || || || ||||| |||||||| ||| | ||||| |||||   | | |  || |   |  |||||||||  |   |   |    | |||  |  |||  ||| | |  || ||| ||     ||   ||
AGATGCTAGGGTAATGTGGGATCAGAAAACTGGACGATCCAGAGGTTTTGGTTTTGTTTCTTTCAGAAATCAGCAGgt---agtgtcattgtgacagtttaatttttatttatttgtacttttttttggtgcggtgctgattgatcatctttgttattcattgacag

upper sequence: GLYMA16G01230.1 (Glycine max), 5'ss of exon 7
lower sequence: AT1G54080.1 (Arabidopsis thaliana), 5'ss of exon 7
AGATGCTAGGGTTATGTGGGATCAGAAGACTGGGCGTTCAAGGGGATTTGGATTTGTTTCATTCCGTAATCAACAGgtccaaatttggttttataatct-taatttttggtgtgacaaggctctttattatggttttgacttagatttttcttgaatttttgtag
 || || || || |||||||| ||||| ||||| || ||||| || ||||| |||||||| ||||||||||| |||||   |  |   ||| || ||   | | ||||  | |  |     || || ||    ||     ||| || |||||  |||||  | ||
GGACGCAAGAGTAATGTGGGACCAGAAAACTGGACGCTCAAGAGGCTTTGGTTTTGTTTCCTTCCGTAATCAGCAGgttttatatccttttaatcatgagtgactttttttttagctccattcattgtttacattgatttttaaatgtttctgtaattt--gcag

upper sequence: GLYMA16G01230.1 (Glycine max), 5'ss of exon 7
lower sequence: AT3G14100.1 (Arabidopsis thaliana), 5'ss of exon 7
AGATGCTAGGGTTATGTGGGATCAGAAGACTGGGCGTTCAAGGGGATTTGGATTTGTTTCATTCCGTAATCAACAGgtc-----caaatttggttttataatcttaatttttggtgtgacaaggctctttattatggttttgacttagatttt-tcttgaatt--tttgtag
 ||||| || ||||||||||| || || |||||||| || || || ||||| |||||||| ||||| |||||||||||      ||   ||    | ||    | | |||||| | |  |       ||  |  ||||||  | | |  ||   | |||| ||  |||| ||
GGATGCGAGAGTTATGTGGGACCAAAAAACTGGGCGCTCGAGAGGCTTTGGGTTTGTTTCCTTCCGCAATCAACAGgtaatgtacattctttaaatcatgcagtgagtttttgttttagctcaaggattgttcgtggtttacattaatgttaaatgttgatttcatttgcag

upper sequence: GLYMA16G01230.1 (Glycine max), 5'ss of exon 7
lower sequence: AT1G54080.2 (Arabidopsis thaliana), 5'ss of exon 7
------------AGATGCTAGGGTTATGTGGGATCAGAAGACTGGGCGTTCAAGGGGATTTGGATTTGTTTCATTCCGTAATCAACAGgtccaaatttggttttataatct-taatttttggtgtgacaaggctctttattatggttttgacttagatttttcttgaatttttgtag
             || || || || |||||||| ||||| ||||| || ||||| || ||||| |||||||| ||||||||||| |||||   |  |   ||| || ||   | | ||||  | |  |     || || ||    ||     ||| || |||||  |||||  | ||
TTCTTATTATAGGGACGCAAGAGTAATGTGGGACCAGAAAACTGGACGCTCAAGAGGCTTTGGTTTTGTTTCCTTCCGTAATCAGCAGgttttatatccttttaatcatgagtgactttttttttagctccattcattgtttacattgatttttaaatgtttctgtaattt--gcag

upper sequence: GLYMA16G01230.1 (Glycine max), 5'ss of exon 7
lower sequence: AT1G17370.1 (Arabidopsis thaliana), 5'ss of exon 7
AGATGCTAGGGTTATGTGGGATCAGAAGACTGGGCGTTCAAGGGGATTTGGATTTGTTTCATTCCGTAATCAACAGgtccaaatttggttttataa-tcttaatttttg-gtgtgacaaggctctttattatggttttgacttagatttt----tcttgaatttttgtag--
 ||||| || ||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||| ||||||||    | |||  | | ||| ||| | |  ||| || |     |||| ||  ||       |||   |    |     ||||   |  || |    
GGATGCAAGAGTTATGTGGGATCAGAAAACTGGGCGTTCAAGAGGATTTGGATTTGTTTCCTTCCGTAACCAACAGgt----acttgactgtctaactctcagtccttgtgtatagattggcttttactttaaacactgatcgattgctgcaaatcttatttccttatgcag

upper sequence: GLYMA16G01230.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv09s0002g00880.t01 (Vitis vinifera), 5'ss of exon 7
AGATGCTAGGGTTATGTGGGATCAGAAGACTGGGCGTTCAAGGGGATTTGGATTTGTTTCATTCCGTAATCAACAGgtccaaattt-----ggttttataatcttaatttttggtgtgacaaggctctttattatggttttgacttagatttttcttgaatttttgtag
|||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||| ||||||||||| |   |||     | ||||  ||| ||  |||   |   || |  | |  || | ||  ||||     | |||||  ||   ||| |  ||
AGATGCGAGGGTTATGTGGGATCAGAAGACTGGGCGTTCAAGAGGGTTTGGATTTGTTTCTTTCCGCAATCAACAGgttcttttttcttttgatttttcaatttttttttccagacagatattgtttcttctaataattttctacaatattttatttct-tttgttcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26058275|gb|CA801189.1|CA801189
EST:     AGACTGGGCGTTCAAGGGGATTTGGATTTGTTTCATTCCGTAATCAACAG                         GATGCACAAAGTGCTATAAATGATTTGACTG
genomic: AGACTGGGCGTTCAAGGGGATTTGGATTTGTTTCATTCCGTAATCAACAGgtccaaattt ... atttttgtagGATGCACAAAGTGCTATAAATGATTTGACTG