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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTACCGTGCTCCGGAACTTATATTTGGGGCCACTGAATATACAACTGCCATAGATATATGGTCAACTGGTTGTGTAATGGCTGAATTACTTCTTGGACAGgtatttggtgcaagaaaaaaatgtgacaaatttttctcatttcatcatttctttgttttctgtcttctttttcattttcctgaagttgaagttgatttgcag

Basic information

species Glycine max
transcript GLYMA16G00400.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G00400.1 (Glycine max), 5'ss of exon 7
lower sequence: AT1G57870.3 (Arabidopsis thaliana), 5'ss of exon 9
CTACCGTGCTCCGGAACTTATATTTGGGGCCACTGAATATACAACTGCCATAGATATATGGTCAACTGGTTGTGTAATGGCTGAATTACTTCTTGGACAGgtatttggtgcaagaaaaaaatgtgacaaatttttctcatttcatcatttctttgttttctgtcttctttttcattttcctgaagttgaagttgatttgcag
||| ||||| || || || || ||||| ||||| || || |||||||| ||||| |||||||| || |||||||| ||||||||| | || ||||||||||| |   |  | | |     ||  |  | ||  || | |||  |   ||||||     |||  ||  |||||  | |  |       | | ||| ||| |||
CTATCGTGCCCCAGAGCTCATTTTTGGAGCCACCGAGTACACAACTGCAATAGACATATGGTCCACAGGTTGTGTGATGGCTGAACTGCTGCTTGGACAGgt-tggagcactatatttgcattagctatatgcttgttattcta---tttcttcaccctcttactcatttttgctctcgc-------ggacttgttttacag

upper sequence: GLYMA16G00400.1 (Glycine max), 5'ss of exon 7
lower sequence: AT1G09840.1 (Arabidopsis thaliana), 5'ss of exon 8
CTACCGTGCTCCGGAACTTATATTTGGGGCCACTGAATATACAACTGCCATAGATATATGGTCAACTGGTTGTGTAATGGCTGAATTACTTCTTGGACAGgtatttggtgcaagaaaaaaatgtgacaaatttttctcatttcatcatttctttgttttctgtctt-ctttttcattttcctgaagttgaagttgatttgcag
||| |||||||| ||||| || ||||| |||| |||||| |||||||| || ||||||||||| ||||||||||| ||||| ||| | |||||||||||||| |   |    |       ||  |  | || ||  ||  |||||  |   ||| ||   |||||| || |||  |   | ||      || |||   | |||
CTATCGTGCTCCAGAACTCATTTTTGGTGCCAGTGAATACACAACTGCAATTGATATATGGTCCACTGGTTGTGTGATGGCCGAACTGCTTCTTGGACAGgt-taaagcatgatttttgcattagctatatgttgttctattcat--tcagtttattccttgtcttactattttgtgcccttg----ctaatttgtcgtacag

upper sequence: GLYMA16G00400.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv12s0035g01060.t01 (Vitis vinifera), 5'ss of exon 7
CTACCGTGCTCCGGAACTTATATTTGGGGCCACTGAATATACAACTGCCATAGATATATGGTCAACTGGTTGTGTAATGGCTGAATTACTTCTTGGACAGgtatt-tggtgcaagaaaaaaatgtgacaaattt---ttctcatttcatcatttctttgtttt-ctgtcttctttttcattttcctgaagttgaagttgatttgcag
 |||||||| || ||||| |||||||| |||||||||||||| ||||| |||||||| ||||| ||||| ||||| ||||||||||| ||||| ||||||||| |    ||  |     | ||||     | ||   ||| | ||||||||||||   ||  |  | | |    ||| || |  |  |  ||   ||  |       
TTACCGTGCCCCAGAACTCATATTTGGTGCCACTGAATATACGACTGCTATAGATATTTGGTCTACTGGCTGTGTGATGGCTGAATTGCTTCTGGGACAGgtagtacactgttaatttcagatgtagttgacttgccttcgcttttcatcatttccaagtcctgttatttaggcttttatctaacc-atcttctggtacag------

upper sequence: GLYMA16G00400.1 (Glycine max), 5'ss of exon 7
lower sequence: PP1S306_62V6.1 (Physcomitrella patens), 5'ss of exon 6
CTACCGTGCTCCGGAACTTATATTTGGGGCCACTGAATATACAACTGCCATAGATATATGGTCAACTGGTTGTGTAATGGCTGAATTACTTCTTGGACAGgtatttggtgcaagaaaaa---------aatgtgacaaatttttctcatttcatcatttctttgttttctgtcttctttttcattttcctgaagttgaagttgatttgcag
||||||||||||||| ||||| ||||| || || || || || |||||||||||||||||||| |  ||||| || ||||| ||  | || || ||||||||| | |||    ||             | |  ||  | || ||   | |    |      | |||  |||      | || ||| |  || ||   ||| | |       
CTACCGTGCTCCGGAGCTTATTTTTGGAGCGACGGAGTACACGACTGCCATAGATATATGGTCGATGGGTTGCGTGATGGCAGAGCTTCTACTAGGACAGgtactcggtcgccgatgggctctcttccacttcgaagagttgtttcaagtgacgcggggggtcgttgactggggc--tgttgattgttttgtagc--aagctaa-------

upper sequence: GLYMA16G00400.1 (Glycine max), 5'ss of exon 7
lower sequence: EFJ07923 (Selaginella moellendorffii), 5'ss of exon 8
CTACCGTGCTCCGGAACTTATATTTGGGGCCACTGAATATACAACTGCCATAGATATATGGTCAACTGGTTGTGTAATGGCTGAATTACTTCTTGGACAGgtatttggtgcaagaaaaaaatgtgacaaatttttctcatttcatcatttctttgttttctgtcttctttttcattttcctgaagttgaagttgatttgcag
 |||||||||||||||||||||||||| || ||||| || ||||| ||||| || || ||||| ||||| || ||  ||||||| ||||||||||| |||||                   | |  |   |  ||   | |    ||||       |  | ||||  |   |||||| |     |  |              
TTACCGTGCTCCGGAACTTATATTTGGTGCAACTGACTACACAACAGCCATCGACATCTGGTCGACTGGATGCGTTCTGGCTGAGTTACTTCTTGGTCAGgtt-----------------gtatacctcgtccttgcaactcttccattatgccactcaccgtctcatcaatcatttccactgtgcag--------------

upper sequence: GLYMA16G00400.1 (Glycine max), 5'ss of exon 7
lower sequence: EFJ07216 (Selaginella moellendorffii), 5'ss of exon 8
CTACCGTGCTCCGGAACTTATATTTGGGGCCACTGAATATACAACTGCCATAGATATATGGTCAACTGGTTGTGTAATGGCTGAATTACTTCTTGGACAGgtatttggtgcaagaaaaaaatgtgacaaatttttctcatttcatcatttctttgttttctgtcttctttttcattttcctgaagttgaagttgatttgcag
||||||||||||||||||||||||||| || ||||| || ||||| ||||| || || ||||| ||||| || ||  ||||||| ||||||||||| |||||                   | |  |   |  ||   | |    ||||       |  | ||||  |   |||||| |     |  |              
CTACCGTGCTCCGGAACTTATATTTGGTGCAACTGACTACACAACAGCCATCGACATCTGGTCGACTGGATGCGTTCTGGCTGAGTTACTTCTTGGTCAGgtt-----------------gtatacctcgtccttgcaactcttccattatgccactcaccgtctcatcaatcatttccactgtgcag--------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26047783|gb|CA784461.1|CA784461
EST:     TAGATATATGGTCAACTGGTTGTGTAATGGCTGAATTACTTCTTGGACAG                         CCCTTGTTTCCTGGAGAGAGTGGAGTT
genomic: TAGATATATGGTCAACTGGTTGTGTAATGGCTGAATTACTTCTTGGACAGgtatttggtg ... tgatttgcagCCCTTGTTTCCTGGAGAGAGTGGAGTT