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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCACATCAAAGGGCTATTGATAAACTTCATTCATTCGTTCTGGCCATCACTACTAAAAGTTCCATCTTTTATGGTTGAATTTACCACTCCCATAATAAGGgtaagtatggttttgttatcatcatcctgtttatagaacttgaggttttcatattttgaattccctgtctctgcag

Basic information

species Glycine max
transcript GLYMA15G43170.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G43170.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os02g47150.1 (Oryza sativa), 5'ss of exon 7
CCACATCAAAGGGCTATTGATAAACTTCATTCATTCGTTCTGGCCATCACTACTAAAAGTTCCATCTTTTATGGTTGAATTTACCACTCCCATAATAAGGgtaagta------------tggt----tttgttatcatcatcc-tgtttatagaacttgaggttttcatattttgaattccctgtctctgcag-------------------------------------------------------------------------------
|||||||||||| || ||||| ||||||||||| || |||||||| || ||  | ||| |||| |||||  ||||||| ||||  ||||| || || | |||| | |            ||||    ||  |  | ||  ||  |||||| ||    | |   | || || ||  ||||  |  |    | ||                                                                               
CCACATCAAAGGCCTGTTGATCAACTTCATTCACTCCTTCTGGCCTTCTCTTATTAAAATTCCTTCTTTCTTGGTTGAGTTTATTACTCCTATTATCAAGgtaggcagctcctaggggttggtatatttcatgcttattttctgtgtttacagcttgtcaaagtatcgtacttaaaattgtcatttgaaggagtcatatccttctgtgggttacatatatttaaagcatgcttggttggacggaataataattcttgaacatatttgcacag

upper sequence: GLYMA15G43170.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G021270_T01 (Zea mays), 5'ss of exon 7
CCACATCAAAGGGCTATTGATAAACTTCATTCATTCGTTCTGGCCATCACTACTAAAAGTTCCATCTTTTATGGTTGAATTTACCACTCCCATAATAAGGgtaa------gtatggttttgt-tatcatcatcctgtttatagaacttgaggttttcatatt--ttgaattccctgtctctgcag------------------------------------------------------------------------------
|||||| |||||| |  |||| |||||||| || || |||||||| || || || ||||||||||||||| ||||||| || |  ||||| || || | ||||       ||| | |||| | |||   |||  | |||||  |  || |  ||||  | ||  | | || || | |  |  ||                                                                               
CCACATTAAAGGGTTGCTGATCAACTTCATCCACTCATTCTGGCCGTCTCTTCTTAAAGTTCCATCTTTTTTGGTTGAGTTCATTACTCCAATCATCAAGgtagattactgtacgattttatctattgacatatt-tttatgtattttcaaattttattcttgatagtataccattttgcaccaaagggatttccccctgctagatatgtattttttttgtaaacaatttgttttgactgccatgatggattcacttgtctag

upper sequence: GLYMA15G43170.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv13s0064g00560.t01 (Vitis vinifera), 5'ss of exon 7
CCACATCAAAGGGCTATTGATAAACTTCATTCATTCGTTCTGGCCATCACTACTAAAAGTTCCATCTTTTATGGTTGAATTTACCACTCCCATAATAAGGgtaagtatggttttgtt--atcatcatcctgttta--tagaacttga---ggttttcatattttgaattccctgtctctgcag------------------
 ||||||||||| ||||||||||| ||||||||||| |||||||| ||||| |||||| ||||||||||  | ||||| || |  || || ||  | | ||| |||||  ||| |||   |||  |||  ||| |  |  | |||||   ||| ||| | |        || | | ||   |                   
TCACATCAAAGGACTATTGATAAATTTCATTCATTCATTCTGGCCTTCACTGCTAAAAATTCCATCTTTCTTAGTTGAGTTCATAACACCTATTGTGAAGgtcagtatcttttagtttggtcagtatcaggttcagttttatcttgaatgggtcttcttttagaaggaaccatatgtcattaatatgtatataatgtacag