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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCTGGTTTCGTGTTAATGAGCAACTACCTATTAATTTACAGAAGTCGTTACCTGACAGACCACCTGAATCGCCCTCATCTAACAATCATGAAGgtgatacaaaatattaccctagatatgaattaaacacctaatttctttgcataagtcagaagattggagttgtatatacaatttttttccttactgagaaaattgatccattgctatatttctgcag

Basic information

species Glycine max
transcript GLYMA15G42460.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G42460.1 (Glycine max), 5'ss of exon 7
lower sequence: AT2G32850.2 (Arabidopsis thaliana), 5'ss of exon 6
GTCTGGTTTCGTGTTAATGAGCAACTACCTATTAATTTACAGAAGTCGTTACCTGACAGACCACCTGAATCGCCCTCATCTAACAATCATGAAGgtgatacaaaata----ttaccctagata-----tgaattaaacacctaatttctttgcataagtcagaagattggagttgtatatacaatttttttccttactgagaaaattgatccattgctatatttctgcag
 | ||||||||||| |||||||| || |||  |||||||||||| || ||||| ||  |||||||||||  ||  ||  ||      ||||| ||| |||   ||||     ||   | ||||     | ||  ||| |  | ||||||||  ||   |  |||  |||                                                             
ATTTGGTTTCGTGTCAATGAGCAGCTTCCTGCTAATTTACAGAAATCATTACCGGATCGACCACCTGAAATGCAATCTACTGGAGTCCATGATGgt-atagtgaataaaacctattttggatagcttctcaaagaaagatgtgatttcttttgatccttatgaattttgacag---------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7692003|gb|AW760119.1|AW760119
EST:     GTCGTTACCTGACAGACCACCTGAATCGCCCTCATCTAACAATCATGAAG                         GTGTGTCAATGCCCTCAAACAGATCACCTCCAATGCCTCGTAGGAACCCAC
genomic: GTCGTTACCTGACAGACCACCTGAATCGCCCTCATCTAACAATCATGAAGgtgatacaaa ... atttctgcagGTGTGTCAATGCCCTCAAACAGATCACCTCCAATGCCTCGTAGGAACCCAC