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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGCATGTCAATTCCTGAATGCCAGAAAAAGCTTCCAGGTGCTTTTACTGGTGGGGAGCCTTTACCTGAGGCTGTACTGTGGCTTCTATTGACAGGAAAGgtatgcaatagttttagaaaatcaaattgaattaattattttgaatattactcataatgcatatataatccttttatgaaggtgttttaatatcaacacttggtttagattttgttgtataatctttgattcatacatttggtcacag

Basic information

species Glycine max
transcript GLYMA15G42300.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G42300.2 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os02g10070.1 (Oryza sativa), 5'ss of exon 7
GGGCATGTCAATTCCTGAATGCCAGAAAAAGCTTCCAGGTGCTTTTACTGGTGGGGAGCCTTTACCTGAGGCTGTACTGTGGCTTCTATTGACAGGAAAGgtatgcaatagttttagaaaatcaaattgaattaattattttgaatattactcataatgcatatataatccttttatgaaggtgttttaatatcaacacttggtttagattttgttgtataatctttgattcatacatttggtcacag
|||  | || ||||| || |||||||||  ||| ||    ||  |||  | |||||||||||| ||||||| | |||| |||||||| ||||| |||||||| ||   |  |||            || || |  || | ||| | | |     |  |     | |  |  |||| ||  ||  |||       | |   | || | || |     ||||  | |||| ||||               
GGGTCTCTCGATTCCAGAGTGCCAGAAAGTGCTGCCGACAGCAGTTAAAGATGGGGAGCCTTTGCCTGAGGGTCTACTTTGGCTTCTTTTGACCGGAAAGgtttggcttctttt-----------gtttaactgtttttcttgtaaact-----tggttttcctgttcttatttt-tgtcggcattt-------agctgctagtgtggactgataggtatt-tgtttgtttcag--------------

upper sequence: GLYMA15G42300.2 (Glycine max), 5'ss of exon 7
lower sequence: PP1S37_33V6.2 (Physcomitrella patens), 5'ss of exon 6
GGGCATGTCAATTCCTGAATGCCAGAAAAAGCTTCCAGGTGCTTTTACTGGTGGGGAGCCTTTACCTGAGGCTGTACTGTGGCTTCTATTGACAGGAAAGgtatgcaatagttttagaaaatcaaattgaattaattattttgaatattactcataatgcatatataatccttttatgaaggtgttttaatatcaacacttggtttagattttgttgtataatctttgattcatacatttggtcacag
 |||||||||||||||||||| ||||||||||||||||  ||| |  ||||||| || ||  | || || |   |  ||||||| || | ||| ||| |||||    |      |   ||||||  ||    |    | ||||    ||  | |   ||  | ||   | ||      |  ||    |  | |  |  |  | || | ||||   |||  |  |                        
AGGCATGTCAATTCCTGAATGTCAGAAAAAGCTTCCAGCAGCTATACCTGGTGGTGAACCGATCCCCGAAGGCTTTTTGTGGCTCCTTTCGACTGGAGAGgtac-tgacgtcacttccaaatcagtttagggtcg--aatttgtgggttcttgagggtgttttta-ggtgctggatcaagcgtaaagtg-tctgcaggcccgattaaaatttgtgtgttcatgcag----------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213588618|gb|DB957654.1|DB957654
EST:     GTGGGGAGCCTTTACCTGAGGCTGTACTGTGGCTTCTATTGACAGGAAAG                         ATACCAAGCAAAGCGCAAGTTGACTCATTATCCAAGGAATTGCGAAGTCGT
genomic: GTGGGGAGCCTTTACCTGAGGCTGTACTGTGGCTTCTATTGACAGGAAAGgtatgcaata ... ttggtcacagATACCAAGCAAAGCGCAAGTTGACTCATTATCCAAGGAATTGCGAAGTCGT
EST: gi|151410306|gb|EV280121.1|EV280121
EST:     GTGGGGAGCCTTTACCTGAGGCTGTACTGTGGCTTCTATTGACAGGAAAG                         ATACCAAGCAAAGCGCAAGTTGACTCATTATCCAAAGAATTGCGAAGTCGT
genomic: GTGGGGAGCCTTTACCTGAGGCTGTACTGTGGCTTCTATTGACAGGAAAGgtatgcaata ... ttggtcacagATACCAAGCAAAGCGCAAGTTGACTCATTATCCAAGGAATTGCGAAGTCGT
EST: gi|151408594|gb|EV278402.1|EV278402
EST:     GTGGGGAGCCTTTACCTGAGGCTGTACTGTGGCTTCTATTGACAGGAAAG                         ATACCAAGCAAAGCGCAAGTTGACTCATTATCCAAGGAATTGCGAAGTCGT
genomic: GTGGGGAGCCTTTACCTGAGGCTGTACTGTGGCTTCTATTGACAGGAAAGgtatgcaata ... ttggtcacagATACCAAGCAAAGCGCAAGTTGACTCATTATCCAAGGAATTGCGAAGTCGT
EST: gi|254317135|gb|GR826080.1|GR826080
EST:     GTGGGGAGCCTTTACCTGAGGCTGTACTGTGGCTTCTATTGACAGGAAAG                         ATACCAAGCAAAGCGCAAGTTGACTCATTATCCAAGGAATTGCGAAGTCGT
genomic: GTGGGGAGCCTTTACCTGAGGCTGTACTGTGGCTTCTATTGACAGGAAAGgtatgcaata ... ttggtcacagATACCAAGCAAAGCGCAAGTTGACTCATTATCCAAGGAATTGCGAAGTCGT
EST: gi|19052548|gb|BM731215.1|BM731215
EST:     GTGGGGAGCCTTTACCTGAGGCTGTACTGTGGCTTCTATTGACAGGAAAG                         ATACCAAGCAAAACGCAAGTTGACTCATTATCCAAAGAAATGCGAAGTCGT
genomic: GTGGGGAGCCTTTACCTGAGGCTGTACTGTGGCTTCTATTGACAGGAAAGgtatgcaata ... ttggtcacagATACCAAGCAAAGCGCAAGTTGACTCATTATCCAAGGAATTGCGAAGTCGT
EST: gi|213604537|gb|DB970657.1|DB970657
EST:     GTGGGGAGCCTTTACCTGAGGCTGTACTGTGGCTTCTATTGACAGGAAAG                         ATACCAAGCAAAGCGCAAGTTGACTCATTATCCAAGGAATTGCGAAGTCGT
genomic: GTGGGGAGCCTTTACCTGAGGCTGTACTGTGGCTTCTATTGACAGGAAAGgtatgcaata ... ttggtcacagATACCAAGCAAAGCGCAAGTTGACTCATTATCCAAGGAATTGCGAAGTCGT
EST: gi|192324396|gb|FK015747.1|FK015747
EST:     GTGGGGAGCCTTTACCTGAGGCTGTACTGTGGCTTCTATTGACAGGAAAG                         ATACCAAGCAAAGCGCAAGTTGACTCATTATCCAAGGAATTGCGAAGTCGT
genomic: GTGGGGAGCCTTTACCTGAGGCTGTACTGTGGCTTCTATTGACAGGAAAGgtatgcaata ... ttggtcacagATACCAAGCAAAGCGCAAGTTGACTCATTATCCAAGGAATTGCGAAGTCGT
EST: gi|213591664|gb|DB969764.1|DB969764
EST:     GTGGGGAGCCTTTACCTGAGGCTGTACTGTGGCTTCTATTGACAGGAAAG                         ATACCAAGCAAAGCGCAAGTTGACTCATTATCCAAGGAATTGCGAAGTCGT
genomic: GTGGGGAGCCTTTACCTGAGGCTGTACTGTGGCTTCTATTGACAGGAAAGgtatgcaata ... ttggtcacagATACCAAGCAAAGCGCAAGTTGACTCATTATCCAAGGAATTGCGAAGTCGT