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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTGTAGGGGTTGTAGGTGCAATTACACCTTGGAACTTTCCCCTTGCTATGATTACTCGAAAGgtatctttagttttgaatcttcactgttctaaatttacccattttcacttttttaagtgtttttaggagtcggggaataacaatcattttaggagttatttgttttctaatatatcag

Basic information

species Glycine max
transcript GLYMA15G41690.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G41690.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv19s0085g00880.t01 (Vitis vinifera), 5'ss of exon 7
CCTGTAGGGGTTGTAGGTGCAATTACACCTTGGAACTTTCCCCTTGCTATGATTACTCGAAAGgtatctttagttttgaatctt--cactgttctaaatttacccattttcacttttt-taagtgtttttaggagtcggggaataacaatcattttaggagttatttgtttt-ctaatatatcag-------------------
|||||||| ||||| ||||||||||| ||||||||||||||  | |||||||| || || ||||| | |    | | |  |  |  || |||    |    |       | | ||||| ||| | | | |  |  | | |     | ||||   || |  |||  ||||  | || | ||  ||                    
CCTGTAGGTGTTGTTGGTGCAATTACTCCTTGGAACTTTCCATTGGCTATGATCACACGGAAGgtgtgtcagatctaggtttattgcattgtgactagacaatgggacataattttttgtaattctgtatcagtcttgtgagcagataatctggttggtggttgattgtcatgctcaaatgacatctttttacatttgtgtcag

upper sequence: GLYMA15G41690.1 (Glycine max), 5'ss of exon 7
lower sequence: PP1S279_72V6.3 (Physcomitrella patens), 5'ss of exon 6
CCTGTAGGGGTTGTAGGTGCAATTACACCTTGGAACTTTCCCCTTGCTATGATTACTCGAAAGgtatctttagttttgaatcttcactgttctaaatttacccattttcactttt--ttaagtgtttttaggagtcggggaataacaatcattttaggagttatt----tgttttctaatatatcag------------------------------------------------------------------
 | || |||||||||||||| || ||||| ||||| ||||| |||||||||||||||||||||||  ||| | | ||      | |   ||  |   || ||     |     ||    |   |||   |   || |    | ||   |||  |||  | | | |    |||     | | | | |                                                                   
GCAGTTGGGGTTGTAGGTGCTATCACACCATGGAATTTTCCGCTTGCTATGATTACTCGAAAGgt-ccttcaatcttttcaaattataatttgatgattgccttgcatagagattagccagccgttacgaaccgttgctcgagaaagttcaggttacaattcaatgttgtgtgcaggagtgtgtaaagtgtgttttgaactttgagagtgacgagatctctgaaagcaagtgggtccatgagcttgactgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213596335|gb|DB960236.1|DB960236
EST:     TAGGTGCAATTACACCTTGGAACTTTCCCCTTGCTATGATTACTCGAAAG                         GTTGGTCCAGCCCTTGCATGTGGCTGTACAGTGGTCATAAAGCCCTCTGAA
genomic: TAGGTGCAATTACACCTTGGAACTTTCCCCTTGCTATGATTACTCGAAAGgtatctttag ... aatatatcagGTTGGTCCAGCCCTTGCATGTGGCTGTACAGTGGTCATAAAGCCCTCTGAA
EST: gi|213614121|gb|DB964893.1|DB964893
EST:     TAGGTGCAATTACACCTTGGAACTTTCCCCTTGCTATGATTACTCGAAAG                         GTTGGTCCAGCCCTTGCATGTGGCTGTACAGTGGTCATAAAGCCCTCTGAA
genomic: TAGGTGCAATTACACCTTGGAACTTTCCCCTTGCTATGATTACTCGAAAGgtatctttag ... aatatatcagGTTGGTCCAGCCCTTGCATGTGGCTGTACAGTGGTCATAAAGCCCTCTGAA
EST: gi|209725352|gb|BW651520.1|BW651520
EST:     TAGGTGCAATTACACCTTGGAACTTTCCCCTTGCTATGATTACTCGAAAG                         GTTGGTCCAGCCCTTGCATGTGGCTGTACAGTGGTCATAAAGCCCTCTGAA
genomic: TAGGTGCAATTACACCTTGGAACTTTCCCCTTGCTATGATTACTCGAAAGgtatctttag ... aatatatcagGTTGGTCCAGCCCTTGCATGTGGCTGTACAGTGGTCATAAAGCCCTCTGAA
EST: gi|209708413|gb|BW665388.1|BW665388
EST:     TAGGTGCAATTACACCTTGGAACTTTCCCCTTGCTATGATTACTCGAAAG                         GTTGGTCCAGCCCTTGCATGTGGCTGTACAGTGGTCATAAAGCCCTCTGAA
genomic: TAGGTGCAATTACACCTTGGAACTTTCCCCTTGCTATGATTACTCGAAAGgtatctttag ... aatatatcagGTTGGTCCAGCCCTTGCATGTGGCTGTACAGTGGTCATAAAGCCCTCTGAA
EST: gi|15337286|gb|BI497942.1|BI497942
EST:     TANGTGCAATTACACCTTGGAACTTTCCCCTTGCTATGATTACTCGAAAG                         GTTGGTCCAGCCCTTGCATGTGGCTGTACAGTGGTCATAAAGCCCTCTGAA
genomic: TAGGTGCAATTACACCTTGGAACTTTCCCCTTGCTATGATTACTCGAAAGgtatctttag ... aatatatcagGTTGGTCCAGCCCTTGCATGTGGCTGTACAGTGGTCATAAAGCCCTCTGAA
EST: gi|298188148|gb|HO034841.1|HO034841
EST:     TAGGTGCAATTACACCTTGGAACTTTCCCCTTGCTATGATTACTCGAAAG                         GTTGGTCCAGCCCTTGCATGTGGCTGTACAGTGGTCATAAGGCCCTCTGAA
genomic: TAGGTGCAATTACACCTTGGAACTTTCCCCTTGCTATGATTACTCGAAAGgtatctttag ... aatatatcagGTTGGTCCAGCCCTTGCATGTGGCTGTACAGTGGTCATAAAGCCCTCTGAA
EST: gi|151395152|gb|EV265023.1|EV265023
EST:     TAGGTGCAATTACACCTTGGAACTTTCCCCTTGCTATGATTACTCGAAAG                         GTTGGTCCAGCCCTTGCATGTGGCTGTACAGTGGTCATAAAGCCCTCTGAA
genomic: TAGGTGCAATTACACCTTGGAACTTTCCCCTTGCTATGATTACTCGAAAGgtatctttag ... aatatatcagGTTGGTCCAGCCCTTGCATGTGGCTGTACAGTGGTCATAAAGCCCTCTGAA