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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAACCAATTCCTGTCACTCAACTTGTCAGGGAAGTTGCCGCTGTAATGCAGGAATTTACTCAGTCTGGgtaaatatttatttgcaaactgtcctctctttgagatataatatgacccctgtaatttagcttgtgaaatgataagatagaagtttatttcatgcatata...

Basic information

species Glycine max
transcript GLYMA15G41330.1
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21600907|gb|BQ611238.1|BQ611238
EST:     CAACTTGTCAGGGAAGTTGCCGCTGTAATGCAGGAATTTACTCAGTCTGG                         TGGTGTCAGGCCTTTTGGAGTGTCTCTGCTAGTTGCCGGGTTTGATGATAA
genomic: CAACTTGTCAGGGAAGTTGCCGCTGTAATGCAGGAATTTACTCAGTCTGGgtaaatattt ... gtcatgatagTGGTGTCAGGCCTTTTGGAGTGTCTCTGCTAGTTGCCGGGTTTGATGATAA
EST: gi|38192386|gb|CF921592.1|CF921592
EST:     CAACTTGTCAGGGAAGTTGCCGCTGTAATGCAGGAATTTACTCAGTCTGG                         TGGTGTCAGGCCTTTTGGAGTGTCTCTGCTAGTTGCCGGGTTTGATGATAA
genomic: CAACTTGTCAGGGAAGTTGCCGCTGTAATGCAGGAATTTACTCAGTCTGGgtaaatattt ... gtcatgatagTGGTGTCAGGCCTTTTGGAGTGTCTCTGCTAGTTGCCGGGTTTGATGATAA
EST: gi|209699717|gb|BW652089.1|BW652089
EST:     CAACTTGTCAGGGAAGTTGCCGCTGTAATGCAGGAATTTACTCAGTCTGG                         TGGTGTCAGGCCTTTTGGAGTGTCTCTGCTAGTTGCCGGGTTTGATGATAA
genomic: CAACTTGTCAGGGAAGTTGCCGCTGTAATGCAGGAATTTACTCAGTCTGGgtaaatattt ... gtcatgatagTGGTGTCAGGCCTTTTGGAGTGTCTCTGCTAGTTGCCGGGTTTGATGATAA
EST: gi|4295815|gb|AI442386.1|AI442386
EST:     CAACTTGTCAGGGAAGTTGCCGCTGTAATGCAGGAATTTACTCAGTCTGG                         TGGTGTCAGGCCTTTTGGAGTGTCTCTGCTAGTTGCCGGGTTTGATGATAA
genomic: CAACTTGTCAGGGAAGTTGCCGCTGTAATGCAGGAATTTACTCAGTCTGGgtaaatattt ... gtcatgatagTGGTGTCAGGCCTTTTGGAGTGTCTCTGCTAGTTGCCGGGTTTGATGATAA
EST: gi|38192385|gb|CF921591.1|CF921591
EST:     CAACTTGTCAGGGAAGTTGCCGCTGTAATGCAGGAATTTACTCAGTCTGG                         TGGTGTCAGGCCTTTTGGAGTGTCTCTGCTAGTTGCCGGGTTTGATGATAA
genomic: CAACTTGTCAGGGAAGTTGCCGCTGTAATGCAGGAATTTACTCAGTCTGGgtaaatattt ... gtcatgatagTGGTGTCAGGCCTTTTGGAGTGTCTCTGCTAGTTGCCGGGTTTGATGATAA
EST: gi|193487275|gb|FK451822.1|FK451822
EST:     CAACTTGTCAGGGAAGTTGCCGCTGTAATGCAGGAATTTACTCAGTCTGG                         TGGTGTCAGGCCTTTTGGAGTGTCTCTGCTAGTTGCCGGGTTTGATGATAA
genomic: CAACTTGTCAGGGAAGTTGCCGCTGTAATGCAGGAATTTACTCAGTCTGGgtaaatattt ... gtcatgatagTGGTGTCAGGCCTTTTGGAGTGTCTCTGCTAGTTGCCGGGTTTGATGATAA
EST: gi|151401084|gb|EV270898.1|EV270898
EST:     CAACTTGTCAGGGAAGTTGCCGCTGTAATGCAGGAATTTACTCAGTCTGG                         TGGTGTCAGGCCTTTTGGAGTGTCTCTGCTAGTTGCCGGGTTTGATGATAA
genomic: CAACTTGTCAGGGAAGTTGCCGCTGTAATGCAGGAATTTACTCAGTCTGGgtaaatattt ... gtcatgatagTGGTGTCAGGCCTTTTGGAGTGTCTCTGCTAGTTGCCGGGTTTGATGATAA
EST: gi|19345956|gb|BM890836.1|BM890836
EST:     CAACTTGTCAGGGAAGTTGCCGCTGTAATGCAGGAATTTACTCAGTCTGG                         TGGTGTCAGGCCTTTTGGAGTGTCTCTGCTAGTTGCCGGGTTTGATGATAA
genomic: CAACTTGTCAGGGAAGTTGCCGCTGTAATGCAGGAATTTACTCAGTCTGGgtaaatattt ... gtcatgatagTGGTGTCAGGCCTTTTGGAGTGTCTCTGCTAGTTGCCGGGTTTGATGATAA
EST: gi|38193672|gb|CF922878.1|CF922878
EST:     CAACTTGTCAGGGAAGTTGCCGCTGTAATGCAGGAATTTACTCAGTCTGG                         TGGTGTCAGGCCTTTTGGAGTGTCTCTGCTAGTTGCCGGGTTTGATGATAA
genomic: CAACTTGTCAGGGAAGTTGCCGCTGTAATGCAGGAATTTACTCAGTCTGGgtaaatattt ... gtcatgatagTGGTGTCAGGCCTTTTGGAGTGTCTCTGCTAGTTGCCGGGTTTGATGATAA
EST: gi|192305316|gb|FG994012.1|FG994012
EST:     CAACTTGTCAGGGAAGTTGCCGCTGTAATGCAGGAATTTACTCAGTCTGG                         TGGTGTCAGGCCTTTTGGAGTGTCTCTGCTAGTTGCCGGGTTTGATGATAA
genomic: CAACTTGTCAGGGAAGTTGCCGCTGTAATGCAGGAATTTACTCAGTCTGGgtaaatattt ... gtcatgatagTGGTGTCAGGCCTTTTGGAGTGTCTCTGCTAGTTGCCGGGTTTGATGATAA
EST: gi|13562525|gb|BG550745.1|BG550745
EST:     CAACTTGTCAGGGAAGTTGCCGNTGTAATGCAGGAATTTACTCAGTCTGG                         TGGTGTCAGGCCTTTTGGAGTGTCTCTGCTAGTTGCCCGGTTTGATGATAA
genomic: CAACTTGTCAGGGAAGTTGCCGCTGTAATGCAGGAATTTACTCAGTCTGGgtaaatattt ... gtcatgatagTGGTGTCAGGCCTTTTGGAGTGTCTCTGCTAGTTGCCGGGTTTGATGATAA
EST: gi|213617097|gb|DB963570.1|DB963570
EST:     CAACTTGTCAGGGAAGTTGCCGCTGTAATGCAGGAATTTACTCAGTCTGG                         TGGTGTCAGGCCTTTTGGAGTGTCTCTGCTAGTTGCCGGGTTTGATGAT
genomic: CAACTTGTCAGGGAAGTTGCCGCTGTAATGCAGGAATTTACTCAGTCTGGgtaaatattt ... gtcatgatagTGGTGTCAGGCCTTTTGGAGTGTCTCTGCTAGTTGCCGGGTTTGATGAT
EST: gi|12688265|gb|BG154601.1|BG154601
EST:     CAACTTGTCAGGGAAGTTGCCGCTGTAATGCAGGAATTTACTTAGTCTGG                         TGGTGTCAGGCCTTTTG
genomic: CAACTTGTCAGGGAAGTTGCCGCTGTAATGCAGGAATTTACTCAGTCTGGgtaaatattt ... gtcatgatagTGGTGTCAGGCCTTTTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAACCAATTCCTGTCACTCAACTTGTCAGGGAAGTTGCCGCTGTAATGCAGGAATTTACTCAGTCTGGgtaaatatttatttgcaaactgtcctctctttgagatataatatgacccctgtaatttagcttgtgaaatgataagatagaagtttatttcatgcatata

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcctctc