Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAAACTTGGTTAAGTTGATTGGTATATGCGCAGAGGTCAGCTTCCGCTGTTTAGTTTATGAACTCATTCCAAATGGCAGTGTGGAATCCCATTTACATGgtacctaacttttcttgattcagtctcgagtaccattccaattgtttagtgctttaagataatggttttcttatatttggtcttctggtag

Basic information

species Glycine max
transcript GLYMA15G18470.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G18470.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv11s0016g02150.t01 (Vitis vinifera), 5'ss of exon 10
AGAAACTTGGTTAAGTTGATTGGTATATGCGCAGAGGTCAGCTTCCGCTGTTTAGTTTATGAACTCATTCCAAATGGCAGTGTGGAATCCCATTTACATGgtacctaacttttcttgat-tcagtctcgagt--accat----tccaattgtttagtgctttaagataatggttttcttatatttggtcttctggtag----------
||||| ||||| ||||| |||||||||||  ||||||   |   |||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||      |  ||||  | | ||| | |  |   |  |    |    || |  | || |  |   | || |  || |||| |||  || | |   |           
AGAAATTTGGTCAAGTTAATTGGTATATGTACAGAGGAGCGTACCCGCTGCTTAGTGTATGAACTCATTCCAAATGGCAGTGTGGAGTCCCATTTACATGgtattattttcctcttagtataagttttgcattggctgtgaggtgatgttttccattgatcaattctcatcgaatttttatgtttattcctttttcatttgctctcag

upper sequence: GLYMA15G18470.1 (Glycine max), 5'ss of exon 7
lower sequence: PP1S43_35V6.1 (Physcomitrella patens), 5'ss of exon 1
---AGAAACTTGGTTAAGTTGATTGGTATATGCGCAGAGGTCAGCTTCCGCTGTTTAGTTTATGAACTCATTCCAAATGGCAGTGTGGAATCCCATTTACATGgtacctaacttttct---tgattcagtctcgagtaccattccaattgtttagtgctttaagataat---ggttttctta--tatttggtcttctggtag-
    | ||| | || | ||| |||||||| ||| | |||  ||  ||| | || || ||||||||||||||  | ||||| ||||||||||| ||||| |||||||  ||| | |  |   ||| | | |    || | | |      || |||| |      |  | |        ||| |  ||    |   |   |||  
CATCGGAACCTTGTGAGGTTAATTGGTATCTGCACCGAG--CAAATTC-GATGCTTGGTTTATGAACTCATAACGAATGGGAGTGTGGAATCTCATTTGCATGgtatgtaattctgttcactgaataacttgtcagaatcttcttcgatgattagagtcaagtgtgagtccgaaccgtctgaaataccaagaaattctgtaca

upper sequence: GLYMA15G18470.1 (Glycine max), 5'ss of exon 7
lower sequence: PP1S95_115V6.1 (Physcomitrella patens), 5'ss of exon 6
---AGAAACTTGGTTAAGTTGATTGGTATATGCGCAGAGGTCAGCTTCCGCTGTTTAGTTTATGAACTCATTCCAAATGGCAGTGTGGAATCCCATTTACATGgtacctaacttttcttgat--tcagtctcgagtaccattccaa-ttgtttagtgctt-taagataatggttttc--ttatatttggtcttctggtag-------------------
    | ||| | || | | | ||||| || ||| | ||||  |   | || ||||| |||||||| || ||| ||||||||||||||||||| |||||||||||||  || ||     |      || | | | ||||   |  || | |       ||| | |    ||||   |    |||   || | |  |  ||                    
CATCGCAACCTTGTGAGGCTAATTGGCATCTGCACTGAGGAAA---TACGATGTTTGGTTTATGAGCTTATTACAAATGGCAGTGTGGAATCTCATTTACATGgtatgtacctgaaaatagagaccacttttgtgtacttctttaaatcgcacgtcacttgtgaagatatggcggtgaactatggctgatttaatcatattttctcttgtaatcctcag

upper sequence: GLYMA15G18470.1 (Glycine max), 5'ss of exon 7
lower sequence: PP1S343_14V6.1 (Physcomitrella patens), 5'ss of exon 6
---AGAAACTTGGTTAAGTTGATTGGTATATGCGCAGAGGTCAGCTTCCGCTGTTTAGTTTATGAACTCATTCCAAATGGCAGTGTGGAATCCCATTTACATGgtacctaacttttcttgattcagtctcgagtacc--attccaattgttt--agtgctttaagataatggttttcttatat-----ttggtcttctggtag--
    ||||| | || ||| | ||||| || ||| | |||   |   | || ||||| ||||||||||||||  | ||||||||||||||||| ||| | |||||||| || ||| | || |||  ||  | | |||   | | || |||| |  ||| || |  ||| ||    ||  ||| |     |   || |||  |    
CATCGAAACCTTGTGAAGCTAATTGGCATCTGCACCGAG---AAAATTCGGTGTTTGGTTTATGAACTCATCACGAATGGCAGTGTGGAATCTCATGTGCATGgtacgta-cttctgttcatt-ggtgcccactactggacttcatttgtgtggagtcctcttcgatgattagatttatatgtgagtctgaatcatctcattatt