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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAGATTTTTTTGGGAAGCTCATGGATGTTTTTAGAGTTTGTGAAGACTTGGAAAATATGGATGGCCTTCACATGATTTACAAAATAGTCAAAGGGATCAgtcagtatttacttttatgccattttaatttgtcactttgttgacatttctttttccatttctgatatatgtttgtttctcttgcag

Basic information

species Glycine max
transcript GLYMA15G15270.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G15270.1 (Glycine max), 5'ss of exon 7
lower sequence: AT3G06670.2 (Arabidopsis thaliana), 5'ss of exon 8
CAAGATTTTTTTGGGAAGCTCATGGATGTTTTTAGAGTTTGTGAAGACTTGGAAAATATGGATGGCCTTCACATGATTTACAAAATAGTCAAAGGGATCAgtcagtatttac---ttttatgccattttaatttgtcactttgttgacat-----ttctttttccatttctgatatatgtttgtttctcttgcag----
|| ||||| ||  |||| || |||| |||||||| | | || || |||||||||||| | ||||||||||||||||| | ||| || ||||| || |||||| |||||| ||     ||||     || |  |  |   |      | ||     || | |||  || ||   ||| | |||  |  | ||| |     
CATGATTTCTTCCGGAATCTGATGGGTGTTTTTAAAATATGCGAGGACTTGGAAAATGTTGATGGCCTTCACATGATATTCAACATTGTCAAGGGAATCAgttagtattcacaaacattataattattcatgtcttagatccacatatatcagaattatcttttgatgtccattatttcttttatctttttgtacgcag

upper sequence: GLYMA15G15270.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv05s0077g01200.t01 (Vitis vinifera), 5'ss of exon 8
CAAGATTTTTTTGGGAAGCTCATGGATGTTTTTAGAGTTTGTGAAGACTTGGAAAATATGGATGGCCTTCACATGATTTACAAAATAGTCAAAGGGATCAgtcagtatttacttttatgccattttaatttgtcactttgttgacatttctttttccatttctgatatat--gtttgtttctcttgcag-----------------------
||||| |||||    ||||| |||||  | |||||  | || |||||||||||||| |||||||||||||||||||| ||||| || |||||||||||||||||||  |  |||||     | ||   | ||  ||| | |   || ||     ||   || |||| |||  |||||||     |                           
CAAGAATTTTTCCAAAAGCTGATGGACCTATTTAGGATATGCGAAGACTTGGAAAACATGGATGGCCTTCACATGATATACAAGATTGTCAAAGGGATCAgtcagtgctctctttt----tacttctctctgctactatatcttcaatttaggctc---ttatgatttatccgtttgttggcactaagaaccttgcgtgttattacttacag