Sequence
atgc intronic sequence ATGC exonic sequenceGTGGCACATTATAAAAGATGTACCAAATCCAAATTTTAGGCACATTATACTGGAGAACAATGAAAATAAGCCAGTAACTAATAGCAGAGACGCACAAGAGgtatatattatttctgctcagaatttttttaataagttttgaaatggtatgttcttctgttaacattttacattagtgtaagttattacatgagtagagt...
Basic information
species | Glycine max |
transcript | GLYMA15G14490.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA15G14490.1 (Glycine max), 5'ss of exon 7
lower sequence: AT1G48110.2 (Arabidopsis thaliana), 5'ss of exon 5
GTGGCACATTATAAAAGATGTACCAAATCCAAATTTTAGGCACATTATACTGGAGAACAATGAAAATAAGCCAGTAACTAATAGCAGAGACGCACAAGAGgtatatattatttctgctcagaatttttttaataagttttgaaatggtatgttcttctgttaacattttacattagtgtaagttattacatgagtagagt
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ATGGCACATCATAAAAGATGTTCCCAATAGCTATTTCAGGCACATCATACTACAGAACAATGAGAATAAGCCGGTCACCAACAGTCGAGACACACAAGAGgt---taattttcctactagaccacgctttgaagattttcacattcagaatttgctaatatatcattttcttctgcag----------------------
upper sequence: GLYMA15G14490.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv05s0020g00460.t01 (Vitis vinifera), 5'ss of exon 7
GTGGCACATTATAAAAGATGTACCAAATCCAAATTTTAGGCACATTATACTGGAGAACAATGAAAATAAGCCAGTAACTAATAGCAGAGACGCACAAGAGgtatatatta--tttctgctcagaatttt--tttaataagttttgaaatggtatgttcttctgttaacattttacat-tagtgtaagttattacatgagtagagt
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GTGGCACATTATAAAGGATGTACCAAATACCAACTTTAGGCACATCATACTAGAGAACAATGAGAATAAGCCAGTGACTAATAGTAGAGACACTCAAGAGgtacatttagcctttctgtttaaattgttgcttgcatttcttttcagaagttaaatattgtagtctatcttgcacctgtagcatcttatttcatatcaat-----Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|21600855|gb|BQ611186.1|BQ611186EST: TGGAGAACAATGAAAATAAGCCAGTAACTAATAGCAGAGACGCACAAGAG ATAATGTATTTGAAAGGTTTGGAAATGCTGAAAATATTCAAAAATCATACA
genomic: TGGAGAACAATGAAAATAAGCCAGTAACTAATAGCAGAGACGCACAAGAGgtatatatta ... ttatttgcagATAATGTATTTGAAAGGTTTGGAAATGCTGAAAATATTCAAAAATCATACA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTGGCACATTATAAAAGATGTACCAAATCCAAATTTTAGGCACATTATACTGGAGAACAATGAAAATAAGCCAGTAACTAATAGCAGAGACGCACAAGAGgtatatattatttctgctcagaatttttttaataagttttgaaatggtatgttcttctgttaacattttacattagtgtaagttattacatgagtagagt
- - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA