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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACTTGGCAAATGTGGTTCCAAATCTTGATGCAGCTGGTCTTAATCTTCTTTCTgtaagtgcaagatgcgatatagtattctttttcattgccattattaaaaattgtgcaaataagtgtctagttcaactgccaccattctcagtccaaggct...

Basic information

species Glycine max
transcript GLYMA15G14390.1
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193639229|gb|FK586450.1|FK586450
EST:     ATGCAGCTGGTCTTAATCTTCTTTCT                         AGTATGCTTTGCTTGGATCCCAGCAAAAGAATCACCGCCAGGAGCGCTGTG
genomic: ATGCAGCTGGTCTTAATCTTCTTTCTgtaagtgcaa ... tgtattccagAGTATGCTTTGCTTGGATCCCAGCAAAAGAATCACCGCCAGGAGCGCTGTG
EST: gi|208194205|gb|GD994320.1|GD994320
EST:     TGGCAAATGTGGTTCCAAATCTTGATGCAGCTGGTCTTAATCTTCTTTCT                         AGTATGCTTTGCTTGGATCCCAGCAAAAGAATCACCGCCAGGAGCGCTGTG
genomic: TGGCAAATGTGGTTCCAAATCTTGATGCAGCTGGTCTTAATCTTCTTTCTgtaagtgcaa ... tgtattccagAGTATGCTTTGCTTGGATCCCAGCAAAAGAATCACCGCCAGGAGCGCTGTG
EST: gi|8669339|gb|BE190446.1|BE190446
EST:     TAGCAAATGTGGTTCCAAATCTTGATGCAGCTGGTCTTAATCTTCTTTCT                         AGTATGCTTTGCTTGGATCCCAGCAAAAGAATTACCGCCAGGAGCGCTGTG
genomic: TGGCAAATGTGGTTCCAAATCTTGATGCAGCTGGTCTTAATCTTCTTTCTgtaagtgcaa ... tgtattccagAGTATGCTTTGCTTGGATCCCAGCAAAAGAATCACCGCCAGGAGCGCTGTG
EST: gi|208158717|gb|GD956090.1|GD956090
EST:     GCTGGTCTTAATCTTCTTTTCT                         AGTATGCTTTGCTTGGATCCCAGCAAAAGAATTACCGCCAGGAGCGCTGT
genomic: GCTGGTCTTAATCTTC-TTTCTgtaagtgcaa ... tgtattccagAGTATGCTTTGCTTGGATCCCAGCAAAAGAATCACCGCCAGGAGCGCTGT
EST: gi|193349822|gb|FK314488.1|FK314488
EST:     CTTGATGCAGCTGGTCTTAATCTTCTTTCT                         AGTATGCTTTGCTTGGATCCCAGCAAAAGAATCACCGCCAGGAGCGCTGTG
genomic: CTTGATGCAGCTGGTCTTAATCTTCTTTCTgtaagtgcaa ... tgtattccagAGTATGCTTTGCTTGGATCCCAGCAAAAGAATCACCGCCAGGAGCGCTGTG
EST: gi|15815178|gb|BI787453.1|BI787453
EST:     TGGCAAATGTGGTTCCAAATCTTGATGCAGCTGGTCTTAATCTTCTTTCT                         AGAATGCTTTGCTTGGATCCCAGCAAAAGAATCACCGCCAGGAGCGCTGTG
genomic: TGGCAAATGTGGTTCCAAATCTTGATGCAGCTGGTCTTAATCTTCTTTCTgtaagtgcaa ... tgtattccagAGTATGCTTTGCTTGGATCCCAGCAAAAGAATCACCGCCAGGAGCGCTGTG
EST: gi|208140682|gb|GD939938.1|GD939938
EST:     TGGCAAATGTGGTTCCAAATCTTGATGCAGCTGGTCTTAATCTTCTTTCT                         AGTATGCTTTGCTTGGATCCCAGCAAAAGAATCACCGCCAGGAGCGCTGTG
genomic: TGGCAAATGTGGTTCCAAATCTTGATGCAGCTGGTCTTAATCTTCTTTCTgtaagtgcaa ... tgtattccagAGTATGCTTTGCTTGGATCCCAGCAAAAGAATCACCGCCAGGAGCGCTGTG
EST: gi|193309655|gb|FK277163.1|FK277163
EST:     TAGCAAATGTGGTTCCAAATCTTGATGCAGCTGGTCTTAATCTTCTTTCT                         AGTATGCTTTGCTTGGATCCCAGCAAAAGAATTACCGCCAGGAGCGCTGTG
genomic: TGGCAAATGTGGTTCCAAATCTTGATGCAGCTGGTCTTAATCTTCTTTCTgtaagtgcaa ... tgtattccagAGTATGCTTTGCTTGGATCCCAGCAAAAGAATCACCGCCAGGAGCGCTGTG
EST: gi|192304398|gb|FG996720.1|FG996720
EST:     TGGCAAATGTGGTTCCAAATCTTGATGCAGCTGGTCTTAATCTTCTTTCT                         AGTATGCTTTGCCTGGATCCCAGCAAAAGAATCACCGCCAGGAGCGCTGTG
genomic: TGGCAAATGTGGTTCCAAATCTTGATGCAGCTGGTCTTAATCTTCTTTCTgtaagtgcaa ... tgtattccagAGTATGCTTTGCTTGGATCCCAGCAAAAGAATCACCGCCAGGAGCGCTGTG
EST: gi|192312082|gb|FK003859.1|FK003859
EST:     TAGCAAATGTGGTTCCAAATCTTGACGCAGCTGGTCTTAATCTTCTTTCT                         AGTATGCTTTGCTTGGATCCCAGCAAAAGAATTACCGCCAGGAGCGCTGTG
genomic: TGGCAAATGTGGTTCCAAATCTTGATGCAGCTGGTCTTAATCTTCTTTCTgtaagtgcaa ... tgtattccagAGTATGCTTTGCTTGGATCCCAGCAAAAGAATCACCGCCAGGAGCGCTGTG
EST: gi|192302863|gb|FG998545.1|FG998545
EST:     TGGCAAATGTGGTTCCAAATCTTGATGCAGCTGGTCTTAATCTTCTTTCT                         AGTATGCTTTGCTTGGATCCCAGCAAAAGAATCACCGCCAGGAGCGCTGTG
genomic: TGGCAAATGTGGTTCCAAATCTTGATGCAGCTGGTCTTAATCTTCTTTCTgtaagtgcaa ... tgtattccagAGTATGCTTTGCTTGGATCCCAGCAAAAGAATCACCGCCAGGAGCGCTGTG
EST: gi|193637930|gb|FK586194.1|FK586194
EST:     AATCTTGATGCAGCTGGTCTTAATCTTCTTTCT                         AGTATGCTTTGCTTGGATCCCAGCAAAAGAATCACCGCCAGGAGCGCTGTG
genomic: AATCTTGATGCAGCTGGTCTTAATCTTCTTTCTgtaagtgcaa ... tgtattccagAGTATGCTTTGCTTGGATCCCAGCAAAAGAATCACCGCCAGGAGCGCTGTG
EST: gi|22933208|gb|BU550347.1|BU550347
EST:     TGGCAAATGTGGTTCCAAATCTTGATGCAGCTGGTCTTAATCTTCTTTCT                         AGTATGCTTTGCTTGGATCCCAGCAAAAGAATCACCGCCAGGAGCGCTGTG
genomic: TGGCAAATGTGGTTCCAAATCTTGATGCAGCTGGTCTTAATCTTCTTTCTgtaagtgcaa ... tgtattccagAGTATGCTTTGCTTGGATCCCAGCAAAAGAATCACCGCCAGGAGCGCTGTG
EST: gi|192301719|gb|FG994413.1|FG994413
EST:     TGGCAAATGTGGTTCCAAATCTTGATGCAGCTGGTCTTAATCTTCTTTTT                         AGTATGCTTTGCTTGGATCCCAGCAAAAGAATCACCGCCAGGAGCGCTGTG
genomic: TGGCAAATGTGGTTCCAAATCTTGATGCAGCTGGTCTTAATCTTCTTTCTgtaagtgcaa ... tgtattccagAGTATGCTTTGCTTGGATCCCAGCAAAAGAATCACCGCCAGGAGCGCTGTG
EST: gi|209726536|gb|BW658090.1|BW658090
EST:     TGGCAAATGTGGTTCCAAATCTTGATGCAGCTGGTCTTAATCTTCTTTCT                         AGTATGCTTTGCTTGGATCCCAGCAAAAGAATCACCGCCAGGAGCGCTGTG
genomic: TGGCAAATGTGGTTCCAAATCTTGATGCAGCTGGTCTTAATCTTCTTTCTgtaagtgcaa ... tgtattccagAGTATGCTTTGCTTGGATCCCAGCAAAAGAATCACCGCCAGGAGCGCTGTG
EST: gi|214008217|gb|DB988548.1|DB988548
EST:     TGGCAAATGTGGTTCCAAATCTTGATGCAGCTGGTCTTAATCTTCTTTCT                         AGTATGCTTTGCTTGGATCCCAGCAAAAGAATCACCGCCAGGAGCGCTGTG
genomic: TGGCAAATGTGGTTCCAAATCTTGATGCAGCTGGTCTTAATCTTCTTTCTgtaagtgcaa ... tgtattccagAGTATGCTTTGCTTGGATCCCAGCAAAAGAATCACCGCCAGGAGCGCTGTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GACTTGGCAAATGTGGTTCCAAATCTTGATGCAGCTGGTCTTAATCTTCTTTCTgtaagtgcaagatgcgatatagtattctttttcattgccattattaaaaattgtgcaaataagtgtctagttcaactgccaccattctcagtccaaggct

- - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - -  CAGCTG