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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATATTCTGAAATGATTGGAAATGTTATGATAGATGCCCGATCAACTGGAAAATATTACCATTgtaagtacataaaattgagaaactctttagatctatatagcattatagcaattaaagactgaagactttgagagtatacctatgcttaatgtaccacctt...

Basic information

species Glycine max
transcript GLYMA15G11890.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G11890.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os06g13810.1 (Oryza sativa), 5'ss of exon 7
ATATATTCTGAAATGATTGGAAATGTTATGATAGATGCCCGATCAACTGGAAAATATTACCATTgtaagtacataa---aattgagaaac-tctttagatctata--tagcattatagcaattaaagactgaagactttgagagtatacctatgcttaatgtaccacctt
||||| |||||||||||||| ||||||||||  ||||| || ||||| || || || ||||| |||||||   |       |||  | || | |    | ||||   |    || |   ||  |  ||  ||    |   ||     | ||||| ||| | |        
ATATACTCTGAAATGATTGGTAATGTTATGACTGATGCACGCTCAACCGGGAAGTACTACCACTgtaagtttctgttttggttgtcagacatatgccaaactatgatttttgttttcctaaacatggaaagagagttgataggagcaaactatgtttagtttga------

upper sequence: GLYMA15G11890.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G059151_T01 (Zea mays), 5'ss of exon 7
ATATATTCTGAAATGATTGGAAATGTTATGATAGATGCCCGATCAACTGGAAAATATTACCATTgtaagtacat-aaaattgagaaactctttagatctatatagcattatagcaattaaagactgaagactttgagagtatacctatgctta--atgtaccacctt
||||| |||||||||||||| ||||||||||  |||||  |||| ||||||||||| ||||| |||||||  || |  |   | ||| |   | |   | || |   |||| |  | ||   | |     | |  |  | | |  ||| |  |  ||||    || |
ATATACTCTGAAATGATTGGCAATGTTATGACTGATGCGAGATCCACTGGAAAATACTACCACTgtaagtttatcagcagcaacaaaataggttgtcattta-atagttatgg--actagtaagttggttcctctattgaaaaattatacacaccatgtgatgccat

upper sequence: GLYMA15G11890.1 (Glycine max), 5'ss of exon 7
lower sequence: AT4G04040.1 (Arabidopsis thaliana), 5'ss of exon 7
ATATATTCTGAAATGATTGGAAATGTTATGATAGATGCCCGATCAACTGGAAAATATTACCATTgtaagtacataaaatt-------gagaaactctttagatctatatagcattatagcaattaaag-actgaagactttgagagtatacctatgcttaatgtaccacctt
||||| || ||||||||||||||||||||||| ||||| || || || |||||||| || || |||||||   |    |         |  || | | | |||  | ||   | |||| || || |     |||  |  |  | ||                          
ATATACTCAGAAATGATTGGAAATGTTATGATCGATGCGCGTTCCACGGGAAAATACTATCACTgtaagtttgttttctcttagcaaaatgaattttcttgatacaaatt-tactatatcatttcatctgttgattatctctatag--------------------------

upper sequence: GLYMA15G11890.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv10s0116g00360.t01 (Vitis vinifera), 5'ss of exon 7
ATATATTCTGAAATGATTGGAAATGTTATGATAGATGCCCGATCAACTGGAAAATATTACCATTgtaagtacataaaattgagaaactctttagatc----tatatagcattatagcaattaaagactgaagactttgagagtatacctatgcttaatgtaccacctt
|| ||| | ||||||||||| ||||| ||||||||||| || |||||||||||||| || || |||||||| ||  |   |  ||| || | | | |    | | || |  |  |     |  | |      | |||||   |||  ||      ||||||       
ATTTATGCAGAAATGATTGGGAATGTCATGATAGATGCTCGCTCAACTGGAAAATACTATCACTgtaagtatattgagg-gtcaaagtcatgaaaccaggttctttacctctgcattttgttcaaatgactcattttgaatttattacttattgaaatgtaatta---

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17021880|gb|BM092914.1|BM092914
EST:     GATTGGAAATGTTATGATAGATGCCCGATCAACTGGAAAATATTACCATT                         TTGTGCGGCTTATGGGGCGTGCAGCTTCACACATTACGCTGGAATGTGCCT
genomic: GATTGGAAATGTTATGATAGATGCCCGATCAACTGGAAAATATTACCATTgtaagtacat ... ctgtctgcagTTGTGCGGCTTATGGGGCGTGCAGCTTCACACATTACGCTGGAATGTGCCT
EST: gi|12773861|gb|BG238788.1|BG238788
EST:     GATTGGAAATGTTATGATAGATGCCCGATCAACTGGAAAATATTACCATT                         TTGTGCGGCTTATGGGGCGTGCAGCTTCACACATTACGCTGGAATGTGCCT
genomic: GATTGGAAATGTTATGATAGATGCCCGATCAACTGGAAAATATTACCATTgtaagtacat ... ctgtctgcagTTGTGCGGCTTATGGGGCGTGCAGCTTCACACATTACGCTGGAATGTGCCT