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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATATTGTACTAATGACTGTTCAGCAATTGCAGACTCTGGAACTTCTTTGTTAGCTGGTCCAACGgtatgaataaatgcttgtaaatgtagcttgtaaatgtaggcagctatttagattttcatttccaattagaatttcattgtctgtaaagcatgcttttaactaatgggaaaggggtctaaaaattgtacaaacaaatgcttctgaccatatgatcaaaatacatgattatgtttttgtag

Basic information

species Glycine max
transcript GLYMA15G11670.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G11670.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv10s0116g01210.t01 (Vitis vinifera), 5'ss of exon 8
GATATTGTACTAATGACTGTTCAGCAATTGCAGACTCTGGAACTTCTTTGTTAGCTGGTCCAACGgtatgaataaatgcttgtaaatgtagcttgtaaatgtaggcagctatttagattttcatttccaattagaatttcattgtctgtaaagcatgcttttaactaatgggaaaggggtctaaaaattgtacaaacaaatgcttctgaccatatgatcaaaatacatgattatgtttttgtag
| || ||| |    |  ||| ||||||||||||| ||||||||||||||||| || |||||||||||||| || | | ||  |||  ||   | || |||    |    |||||  | ||     ||| || | |  |||    |||   |   ||  |  ||  | ||                                                                           
GGTACTGTGCCGGAGGTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGTTGGCAGGTCCAACGgtatgtatcagtactcttaagagt--ttggttaatt---gtttttattttaacttctg--tcccatcaaatattct---tctaggatttattgtactagttgatacactt---------------------------------------------------------------------

upper sequence: GLYMA15G11670.1 (Glycine max), 5'ss of exon 7
lower sequence: PP1S99_158V6.1 (Physcomitrella patens), 5'ss of exon 7
GATATTGTACTAATGACTGTTCAGCAATTGCAGACTCTGGAACTTCTTTGTTAGCTGGTCCAACGgtatgaataaatgcttgtaaatgtagcttgtaaatgtaggcagctatttagattttcatttccaattagaatttcattgtctgtaaagcatgcttttaactaatgggaaaggggtctaaaaattgta-caaacaaatgcttctgaccatatgatcaaaatacatgattatgtttttgtag
|||  ||| ||   |  ||| | ||||||||||| || ||||||||| ||||||||||||| |||||   | |   |||    |     ||    |  || |      |     |  |  |  | |||   | ||||     | |   |   || | || ||  |||| | ||      |  |||| ||||  | || || ||||| ||  | |  |||     |   ||||             
GATTCTGTGCTGGAGGATGTGCTGCAATTGCAGATTCCGGAACTTCTCTGTTAGCTGGTCCTACGgtt--agttcctgcccagagccaaagtaaatgtatttcatggtcgcgacaactggtgctctcccgattgaatgcagatatggatgttgcctactatt--ctaa-gtgatgccacttgaaaatttgtctctaataagtgcttatgtac-tgggattg--ttgtctgatag-----------