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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAAGCTCATCGAATCAAGAATGAGAATTCCTTGCTGTCCAAAACAATGAGGCTCTACAGTACAAACTACCGTCTCCTTATTACTGGCACGCCACTTCAGgtatgacttgttgtattatccataatgatgtagtcacctgaagaatggttttttcttatctttaatttgtttaatttattggtccatactaataaacatg...

Basic information

species Glycine max
transcript GLYMA15G10370.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G10370.1 (Glycine max), 5'ss of exon 7
lower sequence: 13113.m00246 (Oryza sativa), 5'ss of exon 7
TGAAGCTCATCGAATCAAGAATGAGAATTCCTTGCTGTCCAAAACAATGAGGCTCTACAGTACAAACTACCGTCTCCTTATTACTGGCACGCCACTTCAGgtatgactt-----gttgtattatccataatga-tgtagtcacctgaagaatggtt-ttttcttatctttaatttgtttaatttattggtcc-atactaataaa-catg-----------------------
|||||| ||||| || || |||||||||||  | |||||||| ||||||||| | || | ||| || || ||||||||||| || ||||| ||||| |||||| | ||      | |||  | |   |   || ||||| ||     | | |  || | ||  | |   |   |     | ||| ||| |   || || ||||  | |                        
TGAAGCACATCGCATAAAAAATGAGAATTCTCTTCTGTCCAAGACAATGAGGATTTATAATACTAATTATCGTCTCCTTATCACAGGCACACCACTCCAGgtaggtctcccctggctgtgctctttttttggactgtagccatggtcaaagtaattatgttggtttacattcctcaagcatttttttgcttttattctgataattcgttgatgctatgattgatgtttgcag

upper sequence: GLYMA15G10370.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os01g27040.1 (Oryza sativa), 5'ss of exon 7
TGAAGCTCATCGAATCAAGAATGAGAATTCCTTGCTGTCCAAAACAATGAGGCTCTACAGTACAAACTACCGTCTCCTTATTACTGGCACGCCACTTCAGgtatgactt-----gttgtattatccataatga-tgtagtcacctgaagaatggtttt-----ttcttatctttaa---tttgtttaattt----------attggtccatactaataaacatg-------
|||||| ||||| || || |||||||||||  | |||||||| ||||||||| | || | ||| || || ||||||||||| || ||||| ||||| |||||| | ||      | |||  | |   |   || ||||| ||     | | |  || |     ||   ||| | ||   ||| |||  |||          ||| ||  || |||  |   |||       
TGAAGCACATCGCATAAAAAATGAGAATTCTCTTCTGTCCAAGACAATGAGGATTTATAATACTAATTATCGTCTCCTTATCACAGGCACACCACTCCAGgtaggtctcccctggctgtgctctttttttggactgtagccatggtcaaagtaattatgttggtttacatcctcaagcatttttttgcttttattctgataattcgttgatgctatgattgatgtttgcag

upper sequence: GLYMA15G10370.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv05s0020g01780.t01 (Vitis vinifera), 5'ss of exon 7
TGAAGCTCATCGAATCAAGAATGAGAATTCCTTGCTGTCCAAAACAATGAGGCTCTACAGTACAAACTACCGTCTCCTTATTACTGGCACGCCACTTCAGgtatgacttgttgtattatccataatg-atgtagtcacctgaagaatggttttttcttatctttaatttgtttaatttat---tggtccatactaataaacatg
||||||||||||||||||||||||||||||  | || || || |||||||| || || ||||| |||||||| || ||||| || || || ||||||||||||  | ||    ||| |   |  ||  || |  |    ||    | |  ||| ||  || ||   |   |  || |      ||     ||||  ||||    
TGAAGCTCATCGAATCAAGAATGAGAATTCTCTTCTTTCAAAGACAATGAGACTATATAGTACGAACTACCGCCTTCTTATCACGGGTACACCACTTCAGgtactaattaa-atataaaaaaacatatatatttttcattggcataggaatttgtcgaattttctgtcattccaaatctggtatgaggattacttttaaat---

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208269002|gb|GE068597.1|GE068597
EST:     GGCTCTACAGTACAAACTATCGTCTCCTTATTACTGGCACACCACTTCAG                         AATAATCTTCATGAACTCTGGTCTCTTCTCAACTTTCTTCTGCCCGAAAT
genomic: GGCTCTACAGTACAAACTACCGTCTCCTTATTACTGGCACGCCACTTCAGgtatgacttg ... attggcacagAATAACCTTCATGAACTCTGGTCTCTTCTCAACTTTCTTCTGCCCGAAAT