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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACATGGCCTCCATAACCCTCAACAAAAATTCAGTGCCTGgtgagatcctattgttttttttttttggttagcagtgagatcctattgtttttctgtttgtgtgcttcagtttgacatttatacttattcaccgtgatattttttgccccattgttactgacatgtgctaattataaaag

Basic information

species Glycine max
transcript GLYMA15G09640.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G09640.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv04s0008g00770.t01 (Vitis vinifera), 5'ss of exon 10
GGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACATGGCCTCCATAACCCTCAACAAAAATTCAGTGCCTGgtgagatcctattgttttttttttttggttagcagtgagatcctattgtttttctgtttgtgtgcttcagtttgacatttatacttattcaccgtgatattttttgccccattgttactgacatgtgctaattataaaag
||| ||||||| ||||||| |||||| |||||||||||||| || || ||||||||||| ||||||||||||||| |  | | ||  ||  |   ||||   |  || |||   ||  || | |     ||  | | |||       |  || |     | |||| |                                              
GGTATTGATGGGGCTCGGGCGGAGAAGATTCTTGACATGGCTTCTATCACCCTCAACAAGAATTCAGTGCCTGgtaaacttcaatccttcatcccttttatattccactgactcccccttttctccaccttattctacttgctccaaatgttaa-----aatcacag----------------------------------------------