1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
CTATCGTGCTCCAGAACTTATATTTGGTGCCACAGAGTATACAAGTTCAATTGATATTTGGTCAGCTGGCTGTGTCCTTGCTGAGCTTCTTTTGGGCCAGgtttgtgtcattgatttgttttcattaattattattattactatgtactattatatgaatctactgcaaaatgaagtaaatgttctcttaattattttccacccatgtgttatctgaaataatttaaacttttgcag
species | Glycine max |
transcript | GLYMA15G09090.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TTGGTATTTGGTCAGCTGGCTGTGTCCTTGCTGAGCTTCTTTTGGGCCAG CCATTATTCCCTGGCGAAAATGCAGTAGACCAGCTCGTACATATTATAAAGEST: gi|254330723|gb|GR841988.1|GR841988
genomic: TTGATATTTGGTCAGCTGGCTGTGTCCTTGCTGAGCTTCTTTTGGGCCAGgtttgtgtca ... acttttgcagCCATTATTCCCTGGCGAAAATGCAGTAGACCAGCTCGTACATATTATAAAG
EST: TTGATATTTGGTCAGCTGGCTGTGTCCTTGCTGAGCTTCTTTTGGGCCAG CCATTATTCCCTGGCGAAAATGCAGTAGACCAGCTCGTACATATTATAAAGEST: gi|27446207|gb|CA953330.1|CA953330
genomic: TTGATATTTGGTCAGCTGGCTGTGTCCTTGCTGAGCTTCTTTTGGGCCAGgtttgtgtca ... acttttgcagCCATTATTCCCTGGCGAAAATGCAGTAGACCAGCTCGTACATATTATAAAG
EST: TTGATATTTGGTCAGCTGGCTGTGTCCTTGCTGAGCTTCTTTTGGGCCAG CCATTATTCCCTGGCGAAAATGCAGTAGACCAGCTCGTEST: gi|208208469|gb|GE008460.1|GE008460
genomic: TTGATATTTGGTCAGCTGGCTGTGTCCTTGCTGAGCTTCTTTTGGGCCAGgtttgtgtca ... acttttgcagCCATTATTCCCTGGCGAAAATGCAGTAGACCAGCTCGT
EST: TTGATATTTGGTCAGCTGGCTGTGTCCTTGCTGAGCTTCTTTTGGGCCAG CCATTATTCCCTGGCGAAAATGCAGTAG
genomic: TTGATATTTGGTCAGCTGGCTGTGTCCTTGCTGAGCTTCTTTTGGGCCAGgtttgtgtca ... acttttgcagCCATTATTCCCTGGCGAAAATGCAGTAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTATCGTGCTCCAGAACTTATATTTGGTGCCACAGAGTATACAAGTTCAATTGATATTTGGTCAGCTGGCTGTGTCCTTGCTGAGCTTCTTTTGGGCCAGgtttgtgtcattgatttgttttcattaattattattattactatgtactattatatgaatctactgcaaaatgaagtaaatgttctcttaattattttccacccatgtgttatctgaaataatttaaacttttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT