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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTATATTGAGAAAGAGGATAGTAAGAAGCTGAAACAAAAGCAAAGGGAGCGCATGCAACCAAAAATGGGGAAAATGGATATAGATTATCAGgtttcatttgtgttttgcaccatttgcattgcttgcttggttttttgtttactcaagtgtcagaactattttcatcctttctaatagttctttttcttggttgctag

Basic information

species Glycine max
transcript GLYMA15G07760.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G07760.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os02g58090.1 (Oryza sativa), 5'ss of exon 7
GCTTATATTGAGAAAGAGGATAGTAAGAAGCTGAAACAAAAGCAAAGGGAGCGCATGCAACCAAAAATGGGGAAAATGGATATAGATTATCAGgtttcatttgtgttttgcaccatttgcattgcttgcttggttttttgtttactcaagtgtcagaac-tattttcatcctttctaatagttctttttcttggttgctag-
|| ||||||||||| ||||||||||| ||| |||||||||||||  ||||||| ||||||||||||||||| || ||||||||||||||||||||   | ||   |  |  |   | |  |  | |   ||| |  | |    | | |  ||| |  ||  |||||||| || | |       |||   ||    | |||  
GCATATATTGAGAAGGAGGATAGTAAAAAGTTGAAACAAAAGCAGCGGGAGCGTATGCAACCAAAAATGGGCAAGATGGATATAGATTATCAGgtaaaaatttactcct--attgtctatagagatcatttgatggtatcaacatttat-tgtaaacacacattttcatactcttt------ccttaagctcaagttctaat

upper sequence: GLYMA15G07760.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G121354_T01 (Zea mays), 5'ss of exon 3
GCTTATATTGAGAAAGAGGATAGTAAGAAGCTGAAACAAAAGCAAAGGGAGCGCATGCAACCAAAAATGGGGAAAATGGATATAGATTATCAGgtttcatttgtgttttgcaccatttgcattgcttgcttggttttttgtttactcaagtgtcagaactattttcatcctttctaatagttctttttcttggttgctag
|| |||||||||||||||||||| |||||| ||||||| || ||  ||||||||||||| || |||||||| |||||||||||||||||||||||     || |      |||  | || | ||      ||   || | ||  ||   |  ||   | || |  || | |    ||       | | ||| ||   |  
GCGTATATTGAGAAAGAGGATAGCAAGAAGTTGAAACAGAAACAGCGGGAGCGCATGCAGCCCAAAATGGGCAAAATGGATATAGATTATCAGgtaaacctttttccacccacagtgtgaaatg------tgaagttgtattggcttgtgcatctatagtagtagcaccatgagcaaacacatgtctactttgtacttt-

upper sequence: GLYMA15G07760.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G132060_T01 (Zea mays), 5'ss of exon 6
GCTTATATTGAGAAAGAGGATAGTAAGAAGCTGAAACAAAAGCAAAGGGAGCGCATGCAACCAAAAATGGGGAAAATGGATATAGATTATCAGgtttcatttgtgttttgcaccatttgcattgcttgcttggttttttgtttactcaagtgtcagaactattttcatcctttctaatagttctttttcttggttgctag
||||||||||||||||||||||| |||||| ||||||| || ||  | ||||| ||||| || || ||||| |||||||||||||||||||||||    |   |      ||| |   |       ||   || |  | ||     || | | ||||  |||||  |       || || || | || ||| ||      
GCTTATATTGAGAAAGAGGATAGCAAGAAGTTGAAACAGAAACAGCGTGAGCGTATGCAGCCCAAGATGGGCAAAATGGATATAGATTATCAGgtagactcctttccacccacaaagcgtgaaatgtgaaagggtagtagtaggaccatgag-cagacatatttctact-----tagtactt-tcttccttagtcatata

upper sequence: GLYMA15G07760.1 (Glycine max), 5'ss of exon 7
lower sequence: AT4G21660.1 (Arabidopsis thaliana), 5'ss of exon 6
GCTTATATTGAGAAAGAGGATAGTAAGAAGCTGAAACAAAAGCAAAGGGAGCGCATGCAACCAAAAATGGGGAAAATGGATATAGATTATCAGgtttcatttgtgttttgcaccatttgcattgcttgcttggttttttgtttactcaagtgtcagaactattttcatcctttctaatagttctttttcttggttgctag
||||| ||||||||||| ||| |||||||  |||| ||||||||| ||||| | ||||||||||||||||| || ||||| || || || ||||||||   | | ||||  |   ||||  |||      ||  | |||| | |     ||   | ||||     ||         ||  ||   |||||  |       
GCTTACATTGAGAAAGAAGATGGTAAGAAATTGAAGCAAAAGCAACGGGAGAGAATGCAACCAAAAATGGGAAAGATGGACATTGACTACCAGgtttc---tattttttttaatctttgttttgt---gatgagtatttgctgatatctgttctataactga---caagtgaagctattctttcctttctcag-------

upper sequence: GLYMA15G07760.1 (Glycine max), 5'ss of exon 7
lower sequence: PP1S505_13V6.1 (Physcomitrella patens), 5'ss of exon 7
GCTTATATTGAGAAAGAGGATAGTAAGAAGCTGAAACAAAAGCAAAGGGAGCGCATGCAACCAAAAATGGGGAAAATGGATATAGATTATCAGgt--ttcatttgtgtttt--gcacc-atttgca--ttgcttgcttggttttttgtttactcaagtgtcagaactattttcatcctttcta-atagttctttttcttggttgctag----------------------
||||||||||| || || || || |||||||| || |||||||| |||||    ||||| ||||| |||||||| ||||| ||||||||||||||  |    ||  | |||  | |   || || |  | |  ||  |  | ||| ||  | ||     | | | | |  |  |   | || | | |||     |  |||||   ||                       
GCTTATATTGAAAAGGAAGACAGCAAGAAGCTTAAGCAAAAGCAGAGGGAAAAGATGCAGCCAAAGATGGGGAAGATGGACATAGATTATCAGgtaatgtgcttaagctttcggaattgatgtggaaatgggatggctcttgtttggtgcattcgtcctttacatcaaagtagagtatatccagagagtcgaagtagttggtgtttaagtttatgtcctgtactttgcag