1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GACAAAGGGTAATTGGAGAGCCCGTTGCCTCTGGGTTAGCCCTTGATGAATCTTGGCTTTGGCATCCTGACTTTGAGACTGCTGCAAAgttagtgccttcacttgtttcattgtttttttgttgttattcttttattgtcttcagttttaagaatataagccgtgttcattctcatgtttcag
species | Glycine max |
transcript | GLYMA15G06100.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GCCCTTGATGAATCTTGGCTTTGGCATCCTGACTTTGAGACTGCTGCAAA GTATGTCATGAGTCCCCCTATTAGGAAACGAGGAEST: gi|11274766|gb|BF325101.1|BF325101
genomic: GCCCTTGATGAATCTTGGCTTTGGCATCCTGACTTTGAGACTGCTGCAAAgttagtgcct ... catgtttcagGTATGTCATGAGTCCCCCTATTAGGAAACGAGGA
EST: GCCCTTGATGAATCTTGGCTTTGGCATCCTGACTTTGAGACTGCTGCAAA GTATGTCATGAGTCCCCCTATTAGGAAACGAGGACATGATAAGGCCCTTCAEST: gi|37995958|gb|CF807547.1|CF807547
genomic: GCCCTTGATGAATCTTGGCTTTGGCATCCTGACTTTGAGACTGCTGCAAAgttagtgcct ... catgtttcagGTATGTCATGAGTCCCCCTATTAGGAAACGAGGACATGATAAGGCCCTTCA
EST: GCCCTTGATGAATCTTGGCTTTGGCATCCTGACTTTGAGACTGCTGCAAA GTATGTCATGAGTCCCCCTATTAGGAAACGAGGACATGATAAGGCCCTTCAEST: gi|207777154|gb|GD748249.1|GD748249
genomic: GCCCTTGATGAATCTTGGCTTTGGCATCCTGACTTTGAGACTGCTGCAAAgttagtgcct ... catgtttcagGTATGTCATGAGTCCCCCTATTAGGAAACGAGGACATGATAAGGCCCTTCA
EST: GCCCTTGATGAATCTTGGCTTTGGCATCCTGACTTTGAGACTGCTGCAAA GTATGTCATGAGTCCCCCTATTAGGAAACGAGGACATGATAAGGCCCTTCAEST: gi|27445929|gb|CA953052.1|CA953052
genomic: GCCCTTGATGAATCTTGGCTTTGGCATCCTGACTTTGAGACTGCTGCAAAgttagtgcct ... catgtttcagGTATGTCATGAGTCCCCCTATTAGGAAACGAGGACATGATAAGGCCCTTCA
EST: GCCCTTGATGAATCTTGGCTTTGGCATCCTGACTTTGAGACTGCTGCAAA GTATGTCATGAGTCCCCCTATTAGGAAACGAGGACATGATAAGGCCCTTCAEST: gi|17400710|gb|BM177492.1|BM177492
genomic: GCCCTTGATGAATCTTGGCTTTGGCATCCTGACTTTGAGACTGCTGCAAAgttagtgcct ... catgtttcagGTATGTCATGAGTCCCCCTATTAGGAAACGAGGACATGATAAGGCCCTTCA
EST: GCCCTTGATGAATCTTGGCTTTGGCATCCTGACTTTGAGACTGCTGCAAA GTATGTCATGAGTCCCCCTATTAGGAAACGAGGACATGATAAGGCCCTTCAEST: gi|14991023|gb|BI316696.1|BI316696
genomic: GCCCTTGATGAATCTTGGCTTTGGCATCCTGACTTTGAGACTGCTGCAAAgttagtgcct ... catgtttcagGTATGTCATGAGTCCCCCTATTAGGAAACGAGGACATGATAAGGCCCTTCA
EST: GCCCTTGATGAATCTTGGCTTTGGCATCCTGACTTTGAGACTGCTGCAAA GTATGTCATGAGTCCCCCTATTAGGAAACGAGGACATGATAAGGCCCTTCAEST: gi|207829995|gb|GD801911.1|GD801911
genomic: GCCCTTGATGAATCTTGGCTTTGGCATCCTGACTTTGAGACTGCTGCAAAgttagtgcct ... catgtttcagGTATGTCATGAGTCCCCCTATTAGGAAACGAGGACATGATAAGGCCCTTCA
EST: GCCCTTGATGAATCTTGGCTTTGGCATCCTGACTTTGAGACTGCTGCAAA GTATGTCATGAGTCCCCCTATTAGGAAACGAGGACATGATAAGGCCCTTCA
genomic: GCCCTTGATGAATCTTGGCTTTGGCATCCTGACTTTGAGACTGCTGCAAAgttagtgcct ... catgtttcagGTATGTCATGAGTCCCCCTATTAGGAAACGAGGACATGATAAGGCCCTTCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACAAAGGGTAATTGGAGAGCCCGTTGCCTCTGGGTTAGCCCTTGATGAATCTTGGCTTTGGCATCCTGACTTTGAGACTGCTGCAAAgttagtgccttcacttgtttcattgtttttttgttgttattcttttattgtcttcagttttaagaatataagccgtgttcattctcatgtttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC