1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GCTGAGCAAAGGGCACGTGAAGAAAGTGAAAGGCTCAGGAAAGAAGAGCGTGAACAGATTGCTGAAAAACGAAGGAGAGACTTGgtttgttttcaatgataactattctttgctattcataatagacaatgacacaacgttccattttgattctcattaacaattatattctttttcccccctattcctatcag
species | Glycine max |
transcript | GLYMA15G05410.5 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TTAGGAAAGAAGAGCGTGAACAGATTGCTGAAAAACGAAGGAGAGACTTG ACTCTCAGGGCTCGTGTGGCTGCTAAGACAGAAGAAAAGAAATTGGAGCTGEST: gi|193389645|gb|FK354446.1|FK354446
genomic: TCAGGAAAGAAGAGCGTGAACAGATTGCTGAAAAACGAAGGAGAGACTTGgtttgttttc ... ttcctatcagACTCTTAGGGCTCGTGTGGCTGCTAAGACAGAAGAAAAGAAATTGGAGCTG
EST: TCAGGAAAGAAGAGCGTGAACAGATTGCTGAAAAACGAAGGAGAGACTTG ACTCTTAGGGCT--TGTGGCTGCTAAGACAGAAGAAAAGAAATTGGAGCTGEST: gi|193614604|gb|FK565148.1|FK565148
genomic: TCAGGAAAGAAGAGCGTGAACAGATTGCTGAAAAACGAAGGAGAGACTTGgtttgttttc ... ttcctatcagACTCTTAGGGCTCGTGTGGCTGCTAAGACAGAAGAAAAGAAATTGGAGCTG
EST: TCAGGAAAGAAGAGCGTGAACAGATTGCTGAAAAACGAAGGAGAGACTTG ACTCTTAGGGCTCGTGTGGCTGCTAAGACEST: gi|254317253|gb|GR826198.1|GR826198
genomic: TCAGGAAAGAAGAGCGTGAACAGATTGCTGAAAAACGAAGGAGAGACTTGgtttgttttc ... ttcctatcagACTCTTAGGGCTCGTGTGGCTGCTAAGAC
EST: TCAG-AAAGAAGAGCGTGAACAGATTGCTGAAAAACGATG-AGAGACTTG ACTCTTAGGGCTCGTGTG-CTGCTAAGACAGA-GAAA-GAAATTG
genomic: TCAGGAAAGAAGAGCGTGAACAGATTGCTGAAAAACGAAGGAGAGACTTGgtttgttttc ... ttcctatcagACTCTTAGGGCTCGTGTGGCTGCTAAGACAGAAGAAAAGAAATTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTGAGCAAAGGGCACGTGAAGAAAGTGAAAGGCTCAGGAAAGAAGAGCGTGAACAGATTGCTGAAAAACGAAGGAGAGACTTGgtttgttttcaatgataactattctttgctattcataatagacaatgacacaacgttccattttgattctcattaacaattatattctttttcccccctattcctatcag
- - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA