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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCTGTAAATGGAGGAAACTGCAAAGAATTGGCCGCACAGCCCGATGTTGATGGATTTTTGGTTGGTGGTGCCTCCCTGAAGgtgatttttccccccattattttggctgtggttggtttcttgctttgcatttaagcaactgactttttgtacttgtctgtaattag

Basic information

species Glycine max
transcript GLYMA15G04290.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G04290.2 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G146206_T02 (Zea mays), 5'ss of exon 8
GTTCTGTAAATGGAGGAAACTGCAAAGAATTGGCCGCACAGCCCGATGTTGATGGATTTTTGGTTGGTGGTGCCTCCCTGAAGgtg--atttttccccccattattttggc--------tgtggttggtttcttgctttgcatttaagcaactgactttt-tgtacttgtctgtaattag----
| |||||||||||||  |||||||||||| | || || || || ||||||||||||||  | |||||||| |||||  |||||||   || |||     |||  || ||          | ||| | ||||      |   |||  | |||  || || | | | |      | || |      
GGTCTGTAAATGGAGCTAACTGCAAAGAACTTGCAGCTCAACCAGATGTTGATGGATTCCTTGTTGGTGGAGCCTCATTGAAGgtatcatctttgtggtcatccttgtgaaaatatatatatggctagtttggaaactc-tattgtaccaagggatttctattttcccaagggaaaatgagcta

upper sequence: GLYMA15G04290.2 (Glycine max), 5'ss of exon 7
lower sequence: Vv06s0004g04800.t01 (Vitis vinifera), 5'ss of exon 8
GTTCTGTAAATGGAGGAAACTGCAAAGAATTGGCCGCACAGCCCGATGTTGATGGATTTTTGGTTGGTGGTGCCTCCCTGAAGgtg-----attt-ttcccccca--ttattt-tggctgtggttggttt---cttgctttgcatttaagcaactga--ctttttgtacttgtctgtaattag----
||||||||||||||| |||||||||||||||| |  | || |  ||||| ||||| |||||||||||||| || ||| | |||||      |||| || |   ||  |||| | |   | |  |    ||   | |  ||   | || ||  ||| |  ||  |  ||    | |   ||||     
GTTCTGTAAATGGAGCAAACTGCAAAGAATTGACAACGCAACTAGATGTGGATGGTTTTTTGGTTGGTGGAGCTTCCTTAAAGgtacggttatttattgcttacaagttatatattattataatctacttggtcatctttcaaactttagagacttatgctcgtcttatccattttccattaaccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208312970|gb|GE115526.1|GE115526
EST:     CCGCACAGCCCGATGTTGATGGATTTTTGGTTGGTGGTGCCTCCCTGAAG                         CCGGAGTTCGTGGACATCATAAATGCTGCCACTGTGAAGAAGAATTGAAAT
genomic: CCGCACAGCCCGATGTTGATGGATTTTTGGTTGGTGGTGCCTCCCTGAAGgtgatttttc ... ctgtaattagCCGGAGTTCGTGGACATCATAAATGCTGCCACTGTGAAGAAGAATTGAAAT
EST: gi|193537914|gb|FK495075.1|FK495075
EST:     CCGCACAGCCCGATGTTGATGGATTTTTGGTTGGTGGTGCCTCCCTGAAG                         CCGGAGTTCGTGGACATCATAAATGCTGCCACTGTGAAGAAGAATTGAAAT
genomic: CCGCACAGCCCGATGTTGATGGATTTTTGGTTGGTGGTGCCTCCCTGAAGgtgatttttc ... ctgtaattagCCGGAGTTCGTGGACATCATAAATGCTGCCACTGTGAAGAAGAATTGAAAT
EST: gi|193581120|gb|FK535459.1|FK535459
EST:     CCGCACAGCCCGATGTTGATGGATTTTTGGTTGGTGGTGCCTCCCTGAAG                         CCGGAGTTCGTGGACATCATAAATGCTGCCACTGTGAAGAAGAATTGAAAT
genomic: CCGCACAGCCCGATGTTGATGGATTTTTGGTTGGTGGTGCCTCCCTGAAGgtgatttttc ... ctgtaattagCCGGAGTTCGTGGACATCATAAATGCTGCCACTGTGAAGAAGAATTGAAAT
EST: gi|193370577|gb|FK334101.1|FK334101
EST:     CCGCACAGCCCGATGTTGATGGATTTTTGGTTGGTGGTGCCTCCCTGAAG                         CCGGAGTTCGTGGACATCATAAATGCTGCCACTGTGAAGAAGAATTGAAAT
genomic: CCGCACAGCCCGATGTTGATGGATTTTTGGTTGGTGGTGCCTCCCTGAAGgtgatttttc ... ctgtaattagCCGGAGTTCGTGGACATCATAAATGCTGCCACTGTGAAGAAGAATTGAAAT
EST: gi|193598751|gb|FK552019.1|FK552019
EST:     CCGCACAGCCCGATGTTGATGGA-TTTTGGTTGGTGGTGCCTCCCTGAAG                         CCGGAGTTCGTGGACATCATAAATGCTGCCACTGTGAAGAAGAATTGAAAT
genomic: CCGCACAGCCCGATGTTGATGGATTTTTGGTTGGTGGTGCCTCCCTGAAGgtgatttttc ... ctgtaattagCCGGAGTTCGTGGACATCATAAATGCTGCCACTGTGAAGAAGAATTGAAAT
EST: gi|207762646|gb|GD733451.1|GD733451
EST:     CCGCACAGCCCGATGTTGATGGATTTTTGGTTGGTGGTGCCTCCCTGAAG                         CCGGAGTTCGTGGACATCATAAATGCTGCCACTGTGAAGAAGAATTGAAAT
genomic: CCGCACAGCCCGATGTTGATGGATTTTTGGTTGGTGGTGCCTCCCTGAAGgtgatttttc ... ctgtaattagCCGGAGTTCGTGGACATCATAAATGCTGCCACTGTGAAGAAGAATTGAAAT
EST: gi|208123263|gb|GD926335.1|GD926335
EST:     TGATGGATTTTTGGTTGGTGGTGCCTCCCTGAAG                         CTGGAGTTCGTGGACATCATAAATGCTGCCACTGTGAAGAAGAATTGAAAT
genomic: TGATGGATTTTTGGTTGGTGGTGCCTCCCTGAAGgtgatttttc ... ctgtaattagCCGGAGTTCGTGGACATCATAAATGCTGCCACTGTGAAGAAGAATTGAAAT
EST: gi|208340341|gb|GE135833.1|GE135833
EST:     GGTGGTGCCTCCCTGAAG                         CCGGAGTTCGTGGACATCATAAAATGCTGCCACTGTGAAGAAGAATTGAAA
genomic: GGTGGTGCCTCCCTGAAGgtgatttttc ... ctgtaattagCCGGAGTTCGTGGACATCAT-AAATGCTGCCACTGTGAAGAAGAATTGAAA
EST: gi|208038499|gb|GD833251.1|GD833251
EST:     CCGCACAGCCCGATGTTGATGGATTTTTGGTTGGTGGTGCCTCCCTGAAG                         CCGGAGTTCGTGGACATCATAAATGCTGCCACTGTGAAGAAGAATTGAAAT
genomic: CCGCACAGCCCGATGTTGATGGATTTTTGGTTGGTGGTGCCTCCCTGAAGgtgatttttc ... ctgtaattagCCGGAGTTCGTGGACATCATAAATGCTGCCACTGTGAAGAAGAATTGAAAT
EST: gi|19935342|gb|BQ080372.1|BQ080372
EST:     CCGCACAGCCCGATGTTGATGGATTTTTGGTTGGTGGTGCCTCCCTGAAG                         CCGGAGTTCGTGGACATCATAAATGCTGCCACTGTGAAGAAGAATTGAAAT
genomic: CCGCACAGCCCGATGTTGATGGATTTTTGGTTGGTGGTGCCTCCCTGAAGgtgatttttc ... ctgtaattagCCGGAGTTCGTGGACATCATAAATGCTGCCACTGTGAAGAAGAATTGAAAT
EST: gi|193667181|gb|FK613479.1|FK613479
EST:     CGCACAGCCCGATGTTGTATGGATTTTTGGTTGGTGGTGCCTCCCTGAAG                         CCGGAGTTCGTGGACATCATAAATGCTGCCACTGTGAAGAAGAATTGAAAT
genomic: CGCACAGCCCGATGTTG-ATGGATTTTTGGTTGGTGGTGCCTCCCTGAAGgtgatttttc ... ctgtaattagCCGGAGTTCGTGGACATCATAAATGCTGCCACTGTGAAGAAGAATTGAAAT
EST: gi|193687214|gb|FK630875.1|FK630875
EST:     CCGCACAGCCCGGTGTTGATGGATTTTTGGTTGGTGGTGCCTCCCTGAAG                         CCGGAGTTCGTGGACATCATAAATGCTGCCACTGTGAAGAAGAATTGAAAT
genomic: CCGCACAGCCCGATGTTGATGGATTTTTGGTTGGTGGTGCCTCCCTGAAGgtgatttttc ... ctgtaattagCCGGAGTTCGTGGACATCATAAATGCTGCCACTGTGAAGAAGAATTGAAAT
EST: gi|193327731|gb|FK295054.1|FK295054
EST:     CGCACAGACCCGATGTTGATGGATTTTTGGTTGGTGGTGCCTCCCTGAAG                         CCGGAGTTCGTGGACATCATAAATGCTGCCACTGTGAAGAAGAATTGAAAT
genomic: CGCACAG-CCCGATGTTGATGGATTTTTGGTTGGTGGTGCCTCCCTGAAGgtgatttttc ... ctgtaattagCCGGAGTTCGTGGACATCATAAATGCTGCCACTGTGAAGAAGAATTGAAAT
EST: gi|7925193|gb|AW831219.1|AW831219
EST:     CCGCACAGCCCGATGTTGATGGATTTTTGGTTGGTGGTGCCTCCCTGAAG                         CCGGAGTTCGTGGACATCATAAATGCTGCCACTGTGAAGAAGAATTGAAAT
genomic: CCGCACAGCCCGATGTTGATGGATTTTTGGTTGGTGGTGCCTCCCTGAAGgtgatttttc ... ctgtaattagCCGGAGTTCGTGGACATCATAAATGCTGCCACTGTGAAGAAGAATTGAAAT
EST: gi|48574787|gb|CO036077.1|CO036077
EST:     CCGCACAGCCCGATGTTGATGGATTTTTGGTTGGTGGTGCCTCCCTGAAG                         CCGGAGTTCGTGGACATCATAAATGCTGCCACTGTGAAGAAGAATTGAAAT
genomic: CCGCACAGCCCGATGTTGATGGATTTTTGGTTGGTGGTGCCTCCCTGAAGgtgatttttc ... ctgtaattagCCGGAGTTCGTGGACATCATAAATGCTGCCACTGTGAAGAAGAATTGAAAT
EST: gi|6095203|gb|AW119870.1|AW119870
EST:     CCGCACAGCCCGATGTTGATGGATTTTTGGTTGGTGGTGCCTCCCTGAAG                         CCGGAGTTCGTGGACATCATAAATGCTGCCACTGTGAAGAAGAATTGAAAT
genomic: CCGCACAGCCCGATGTTGATGGATTTTTGGTTGGTGGTGCCTCCCTGAAGgtgatttttc ... ctgtaattagCCGGAGTTCGTGGACATCATAAATGCTGCCACTGTGAAGAAGAATTGAAAT
EST: gi|208313394|gb|GE115978.1|GE115978
EST:     CCGCACAGCCCGATGTTGATGGATTTTTGGTTGGTGGTGCCTCCCTGAAG                         CCGGAGTTCGTGGACATCATAAATGCTGCCACTGTGAAGAAGAATTGAAAT
genomic: CCGCACAGCCCGATGTTGATGGATTTTTGGTTGGTGGTGCCTCCCTGAAGgtgatttttc ... ctgtaattagCCGGAGTTCGTGGACATCATAAATGCTGCCACTGTGAAGAAGAATTGAAAT
EST: gi|193606979|gb|FK557368.1|FK557368
EST:     GCACAGCCCGATGTTGATGGATTTTTGGTTGGTGGTGCCTCCCTGAAG                         CCGGAGTTCGTGGACATCATAAATGCTGCCACTGTGAAGAAGAATTGAAAT
genomic: GCACAGCCCGATGTTGATGGATTTTTGGTTGGTGGTGCCTCCCTGAAGgtgatttttc ... ctgtaattagCCGGAGTTCGTGGACATCATAAATGCTGCCACTGTGAAGAAGAATTGAAAT
EST: gi|208144099|gb|GD943760.1|GD943760
EST:     TTGATGGTATTTTTTGGTTGGTGGTGCCTCCCTGAAG                         CCGGAGTTCGTGGACATCATAAATGCTGCCACTGTGAAGAAGAATTGAAAT
genomic: TTGATGG-A-TTTTTGGTTGGTGGTGCCTCCCTGAAGgtgatttttc ... ctgtaattagCCGGAGTTCGTGGACATCATAAATGCTGCCACTGTGAAGAAGAATTGAAAT
EST: gi|193413289|gb|FK377342.1|FK377342
EST:     CCGCACAGCCCGATGTTGATGGATTTTTGGTTGGTGGTGCCTCCCTGAAG                         G
genomic: CCGCACAGCCCGATGTTGATGGATTTTTGGTTGGTGGTGCCTCCCTGAAGgtgatttttc ... ctgtaattag-
EST: gi|193413289|gb|FK377342.1|FK377342
EST:     CCGCACAGCCCGATGTTGATGGATTTTTGGTTGGTGGTGCCTCCCTGAAG                         G
genomic: CCGCACAGCCCGATGTTGATGGATTTTTGGTTGGTGGTGCCTCCCTGAAGgtgatttttc ... ctgtaattag-
EST: gi|193331092|gb|FK293252.1|FK293252
EST:     CCGCACAGCCCGATGTTGATGGATTTTTGGTTGGTGGTGCCTCCCTGAAG                         CCGGAGTTCGTGGACATCATAAATGCTGCCACTGTGAAGAAGAATTGAAAT
genomic: CCGCACAGCCCGATGTTGATGGATTTTTGGTTGGTGGTGCCTCCCTGAAGgtgatttttc ... ctgtaattagCCGGAGTTCGTGGACATCATAAATGCTGCCACTGTGAAGAAGAATTGAAAT
EST: gi|193663871|gb|FK612877.1|FK612877
EST:     CCGCACAGCCCGATGTTGATGGA-TTTTGGTTGGTGGTGCCTCCCTGAAG                         CCGGAGTTCGTGGACATCATAAATGCTGCCACTGTGAAGAAGAATTGAAAT
genomic: CCGCACAGCCCGATGTTGATGGATTTTTGGTTGGTGGTGCCTCCCTGAAGgtgatttttc ... ctgtaattagCCGGAGTTCGTGGACATCATAAATGCTGCCACTGTGAAGAAGAATTGAAAT
EST: gi|193354448|gb|FK321196.1|FK321196
EST:     CCGCACAGCCCGATGTTGATGGATTTTTGGTTGGTGGTGCCTCCCTGAAG                         A
genomic: CCGCACAGCCCGATGTTGATGGATTTTTGGTTGGTGGTGCCTCCCTGAAGgtgatttttc ... ctgtaattag-
EST: gi|193354448|gb|FK321196.1|FK321196
EST:     CCGCACAGCCCGATGTTGATGGATTTTTGGTTGGTGGTGCCTCCCTGAAG                         A
genomic: CCGCACAGCCCGATGTTGATGGATTTTTGGTTGGTGGTGCCTCCCTGAAGgtgatttttc ... ctgtaattag-
EST: gi|193445476|gb|FK413967.1|FK413967
EST:     CCGCACAGCCCGATGTTGATGGATTTTTGGTTGGTGGTGCCTCCCTGAAG                         CCGGAGTTCGTGGACATCATAAATGCTGCCACTGTG
genomic: CCGCACAGCCCGATGTTGATGGATTTTTGGTTGGTGGTGCCTCCCTGAAGgtgatttttc ... ctgtaattagCCGGAGTTCGTGGACATCATAAATGCTGCCACTGTG
EST: gi|208193109|gb|GD987990.1|GD987990
EST:     CCGCACAGCCCGATGTTGATGGATTTTTGGTTGGTGGTGCCTCCCTGAAG                         CCGGAGTTCGTGGACATCATAAATGCTGCCACTGTGAAGAAGAATTGAAAT
genomic: CCGCACAGCCCGATGTTGATGGATTTTTGGTTGGTGGTGCCTCCCTGAAGgtgatttttc ... ctgtaattagCCGGAGTTCGTGGACATCATAAATGCTGCCACTGTGAAGAAGAATTGAAAT
EST: gi|208154245|gb|GD958406.1|GD958406
EST:     CCGCACAGCCCGATGTTGATGGATTTTTGGTTGGTGGTGCCTCCCTGAAG                         CCGGAGTTCGTGGACATCATAAATGCTGCCACTGTGAAGAAGAATTGAAAT
genomic: CCGCACAGCCCGATGTTGATGGATTTTTGGTTGGTGGTGCCTCCCTGAAGgtgatttttc ... ctgtaattagCCGGAGTTCGTGGACATCATAAATGCTGCCACTGTGAAGAAGAATTGAAAT
EST: gi|208287509|gb|GE085761.1|GE085761
EST:     GGTGGTGCCTCCCTGTAAG                         CCGGAGTTCGTGGACATCATAAATGCTGCCACTGTGAAGAAGAATTGAAA
genomic: GGTGGTGCCTCCCTG-AAGgtgatttttc ... ctgtaattagCCGGAGTTCGTGGACATCATAAATGCTGCCACTGTGAAGAAGAATTGAAA
EST: gi|193608058|gb|FK555711.1|FK555711
EST:     CCGCACAGCCCGATGTTGATGGATTTTTGGTTGGTGGTGCCTCCCTGAAG                         CCGGAGTTCGTGGACATCATAAATGCTGCCACTGTGAAGAAAGAAATTGAA
genomic: CCGCACAGCCCGATGTTGATGGATTTTTGGTTGGTGGTGCCTCCCTGAAGgtgatttttc ... ctgtaattagCCGGAGTTCGTGGACATCATAAATGCTGCCACTGTGAAGAA-GAA-TTGAA
EST: gi|208303964|gb|GE105683.1|GE105683
EST:     CCGCACAGCCCGATGTTGATGGATTTTTGGTTGGTGGTGCCTCCCTGAAG                         CCGGAGTTCGTGGACATCATAAATGCTGCCA
genomic: CCGCACAGCCCGATGTTGATGGATTTTTGGTTGGTGGTGCCTCCCTGAAGgtgatttttc ... ctgtaattagCCGGAGTTCGTGGACATCATAAATGCTGCCA
EST: gi|193607426|gb|FK559153.1|FK559153
EST:     CCGCACAGCCCGATGTTGATGGATTTTTGGTTGGTGGTGCCTCCCTGAAG                         CCGGAGTTCGTGGACATCATAAATGCTGCCACTGTGAAGAAGAATTGAAAT
genomic: CCGCACAGCCCGATGTTGATGGATTTTTGGTTGGTGGTGCCTCCCTGAAGgtgatttttc ... ctgtaattagCCGGAGTTCGTGGACATCATAAATGCTGCCACTGTGAAGAAGAATTGAAAT
EST: gi|208240522|gb|GE040094.1|GE040094
EST:     CCGCACAGCCCGATGTTGATGGATTTTTGGTTGGTGGTGCCTCCCTGAAG                         CCGGAGTTCGTGGACATCATAAATGCTGCCACTGTGAAGAAGAATTGAAAT
genomic: CCGCACAGCCCGATGTTGATGGATTTTTGGTTGGTGGTGCCTCCCTGAAGgtgatttttc ... ctgtaattagCCGGAGTTCGTGGACATCATAAATGCTGCCACTGTGAAGAAGAATTGAAAT
EST: gi|193665522|gb|FK614282.1|FK614282
EST:     CCGCACAGCCCGATGTTGATGGATTTTTGGTTGGTGGTGCCTCCCTGAAG                         CCGGAGTTCGTGGACATCATAAATGACTGCCACTGTGAAGAAGAATTGAAA
genomic: CCGCACAGCCCGATGTTGATGGATTTTTGGTTGGTGGTGCCTCCCTGAAGgtgatttttc ... ctgtaattagCCGGAGTTCGTGGACATCATAAATG-CTGCCACTGTGAAGAAGAATTGAAA
EST: gi|7028322|gb|AW458105.1|AW458105
EST:     CCGCACAGCCCGATGTTGATGGATTTTTGGTTGGTGGTGCCTCCCTGAAG                         CCGGAGTTCGTGGACATCATAAATGCTGCCACTGTGAAGAAGAATTGAAAT
genomic: CCGCACAGCCCGATGTTGATGGATTTTTGGTTGGTGGTGCCTCCCTGAAGgtgatttttc ... ctgtaattagCCGGAGTTCGTGGACATCATAAATGCTGCCACTGTGAAGAAGAATTGAAAT
EST: gi|193664847|gb|FK610849.1|FK610849
EST:     CCGCACAGCCCGATGTTGATGGATTTTTGGTTGGTGGTGCCTCCCTGAAG                         CCGGAGTTCGTGGACATCATAAATGCTGCCACTGTGAAGAAGAATTGAAAT
genomic: CCGCACAGCCCGATGTTGATGGATTTTTGGTTGGTGGTGCCTCCCTGAAGgtgatttttc ... ctgtaattagCCGGAGTTCGTGGACATCATAAATGCTGCCACTGTGAAGAAGAATTGAAAT
EST: gi|193592849|gb|FK548755.1|FK548755
EST:     AGCCCGATGTTGATGGATTTTTGGTTGGTGGTGCCTCCCTGAAG                         CCGGAGTTCGTGGACATCATAAATGCTGCCACTGTGGAGAAGAATTGAAAT
genomic: AGCCCGATGTTGATGGATTTTTGGTTGGTGGTGCCTCCCTGAAGgtgatttttc ... ctgtaattagCCGGAGTTCGTGGACATCATAAATGCTGCCACTGTGAAGAAGAATTGAAAT
EST: gi|193535473|gb|FK492143.1|FK492143
EST:     CCCGATGTTGATGGATTTTTGGTTGGTGGTGCCTCCCTGAAG                         CCGGAGTTCGTGGACATCATAAATGCTGCCACTGTGAAGAAGAATTGAAAT
genomic: CCCGATGTTGATGGATTTTTGGTTGGTGGTGCCTCCCTGAAGgtgatttttc ... ctgtaattagCCGGAGTTCGTGGACATCATAAATGCTGCCACTGTGAAGAAGAATTGAAAT
EST: gi|193559178|gb|FK515937.1|FK515937
EST:     CCGCACAGCCCGATGTTGATGGATTTTTGGTTGGTGGTGCCTCCCTGAAG                         CCGGAGTTCGTGGACATCATAAATGCTGCCACTGTGAAGAAGAATTGAAAT
genomic: CCGCACAGCCCGATGTTGATGGATTTTTGGTTGGTGGTGCCTCCCTGAAGgtgatttttc ... ctgtaattagCCGGAGTTCGTGGACATCATAAATGCTGCCACTGTGAAGAAGAATTGAAAT
EST: gi|193722852|gb|FK657904.1|FK657904
EST:     CCGCACAGCCCGGTGTTGATGGATTTTTGGTTGGTGGTGCCTCCCTGAAG                         CCGGAGTTCGTGGACATCATAAATGCTGCCACTGTGAAGAAGAATTGAAAT
genomic: CCGCACAGCCCGATGTTGATGGATTTTTGGTTGGTGGTGCCTCCCTGAAGgtgatttttc ... ctgtaattagCCGGAGTTCGTGGACATCATAAATGCTGCCACTGTGAAGAAGAATTGAAAT
EST: gi|208295542|gb|GE090475.1|GE090475
EST:     CCGCACAGCCCGATGTTGATGGATTTTTGGTTGGTGGTGCCTCCCTGAAG                         CCGGAGTTCGTGGACATCATAAATGCTGCCACTGTGAAGAAGAATTGAAAT
genomic: CCGCACAGCCCGATGTTGATGGATTTTTGGTTGGTGGTGCCTCCCTGAAGgtgatttttc ... ctgtaattagCCGGAGTTCGTGGACATCATAAATGCTGCCACTGTGAAGAAGAATTGAAAT
EST: gi|193647093|gb|FK593118.1|FK593118
EST:     CCGCACAGCCCGATGTTGATGGATTTTTGGCTGGTGGTGCCTCCCTGAAG                         CCGGAGTTCGTGGACATCATAAATGCTGCCACTGTGAAGAAGAATTGAAAT
genomic: CCGCACAGCCCGATGTTGATGGATTTTTGGTTGGTGGTGCCTCCCTGAAGgtgatttttc ... ctgtaattagCCGGAGTTCGTGGACATCATAAATGCTGCCACTGTGAAGAAGAATTGAAAT
EST: gi|207753705|gb|GD723303.1|GD723303
EST:     CCGCACAGCCCGATGTTGATGGATTTTTGGTTGGTGGTGCCTCCCTGAAG                         CCGGAGTTCGTGGACATCATAAATGCTGCCACTGTGAAGAAGAATTGAAAT
genomic: CCGCACAGCCCGATGTTGATGGATTTTTGGTTGGTGGTGCCTCCCTGAAGgtgatttttc ... ctgtaattagCCGGAGTTCGTGGACATCATAAATGCTGCCACTGTGAAGAAGAATTGAAAT
EST: gi|208055143|gb|GD852376.1|GD852376
EST:     CCGCACAGCCCGATGTTGATGGATTTTTGGTTGGTGGTGCCTCCCTGAAG                         CCGGAGTTCGTGGACATCATAAATGCTGCCACTGTGAAGAAGAATTGAAAT
genomic: CCGCACAGCCCGATGTTGATGGATTTTTGGTTGGTGGTGCCTCCCTGAAGgtgatttttc ... ctgtaattagCCGGAGTTCGTGGACATCATAAATGCTGCCACTGTGAAGAAGAATTGAAAT
EST: gi|193467546|gb|FK431315.1|FK431315
EST:     CCGCACAGCCCGATGTTGATGGATTTT-GGTTGGTGGTGCCTCCCTGAAG                         CCGGAGTTCGTGGACATCATAAATGCTGCCACTGTGAAGAAG
genomic: CCGCACAGCCCGATGTTGATGGATTTTTGGTTGGTGGTGCCTCCCTGAAGgtgatttttc ... ctgtaattagCCGGAGTTCGTGGACATCATAAATGCTGCCACTGTGAAGAAG
EST: gi|8402137|gb|BE057771.1|BE057771
EST:     CCGCACAGCCCGATGTTGATGGATTTTTGGTTGGTGGTGCCTCCCTGAAG                         CCGGAGTTCGTGGACATCATAAATGCTGCCACTGTGAAGAAGAATTGAAAT
genomic: CCGCACAGCCCGATGTTGATGGATTTTTGGTTGGTGGTGCCTCCCTGAAGgtgatttttc ... ctgtaattagCCGGAGTTCGTGGACATCATAAATGCTGCCACTGTGAAGAAGAATTGAAAT
EST: gi|20813897|gb|BQ298375.1|BQ298375
EST:     CCGCACAGCCCGATGTTGATGGATTTTTGGTTGGTGGTGCCTCCCTGAAG                         CCGTAGTTCGTGGACATCATAAATGCTGCCACTGTGAAGAAGAATTGAAAT
genomic: CCGCACAGCCCGATGTTGATGGATTTTTGGTTGGTGGTGCCTCCCTGAAGgtgatttttc ... ctgtaattagCCGGAGTTCGTGGACATCATAAATGCTGCCACTGTGAAGAAGAATTGAAAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTCTGTAAATGGAGGAAACTGCAAAGAATTGGCCGCACAGCCCGATGTTGATGGATTTTTGGTTGGTGGTGCCTCCCTGAAGgtgatttttccccccattattttggctgtggttggtttcttgctttgcatttaagcaactgactttttgtacttgtctgtaattag

- - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGAAG