Sequence
atgc intronic sequence ATGC exonic sequenceTTGGCCGAACATGGATTGATTCACCTGGGGAGATGATAATGACAAACTTGACAACTGGAGACAAAGTTGTACTATACTTTCAACCATGTGGATGGTTTGGgtatgtaacatcattttcttgtattgtttttcaattaaaacatttgtgattggtttgtaataatactatattggatttatattaaacttgtggacaatta...
Basic information
species | Glycine max |
transcript | GLYMA15G04210.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA15G04210.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os03g16690.1 (Oryza sativa), 5'ss of exon 7
TTGGCCGAACATGGATTGATTCACCTGGGGAGATGATAATGACAAACTTGACAACTGGAGACAAAGTTGTACTATACTTTCAACCATGTGGATGGTTTGGgtatg-taacatcattttcttgtattgtttttcaattaaaacatttgtgattggtttgtaataatactatattggatttatattaaacttgtggacaatta---
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TTGGGCGTACTTGGGTTGATTCTCCTGGAGAGATGGTATTGACAAACCTGACAACTGGAGACAAAGTTGTGCTTTTATTCCAGCCATGTGGCTGGTTTGGgtatgataacactaatcctgactgtc-tactgcaatcttcagccttg-aattaat--attgtaattttatgtttccttcgttttagaattacattgaatgttcc
upper sequence: GLYMA15G04210.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G174644_T01 (Zea mays), 5'ss of exon 7
TTGGCCGAACATGGATTGATTCACCTGGGGAGATGATAATGACAAACTTGACAACTGGAGACAAAGTTGTACTATACTTTCAACCATGTGGATGGTTTGGgtatgtaa-----catcatttt---cttgtattgtttttcaattaa-aacatttgtgattggtttgt--aataatactatattggatttatattaaacttgtggacaatta
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TTGGGCGCACTTGGGTTGATTCTCCTGGAGAGATGGTCATGACGAACCTGACAACTGGAGACAAAGTTGTGCTATATTTCCAGCCATGCGGCTGGTTTGGgtatgatattggccatcaatttattcttgcatttcttgtccgttgacagctcctgttgccaaattattcagtttttcagtagtaacttgcttttatgcat-----------
upper sequence: GLYMA15G04210.1 (Glycine max), 5'ss of exon 7
lower sequence: AT5G59420.1 (Arabidopsis thaliana), 5'ss of exon 7
TTGGCCGAACATGGATTGATTCACCTGGGGAGATGATAATGACAAACTTGACAACTGGAGACAAAGTTGTACTATACTTTCAACCATGTGGATGGTTTGGgtatgtaacat--cattttcttgtattgtttttcaattaaaa------catttgtgattggtttgtaat---aatactatattggatttatattaaacttgtggacaatta
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TTGGACGAACCTGGGTTGACTCACCTGGGGAAATGGTCATGACAAATTTAACCACTGGAGACAAAGTTGTGCTTTATTTCCAGCCATGTGGCTGGTTCGGgtaattgacaagacattgcttcatcttattgttcattgatactctgttcattttgtctcgtcttgtaatcccgatatgctattaaattgaaatttgctaccttgatcgcag
upper sequence: GLYMA15G04210.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv06s0004g04930.t01 (Vitis vinifera), 5'ss of exon 7
TTGGCCGAACATGGATTGATTCACCTGGGGAGATGATAATGACAAACTTGACAACTGGAGACAAAGTTGTACTATACTTTCAACCATGTGGATGGTTTGGgtatgtaacatcattttcttgtattgtttttcaattaaaacatttgtgattggtttgtaataatactatattggattta-tattaaacttgtg-gacaatta
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TTGGACGGACATGGGTTGATTCACCAGGGGAGATGATCATGTCCAATATGACAACCGGGGACAAGGCTGTGCTATATTTTCAACCATGTGGCTGGTTTGGgtatgtcaaaatttctcatttcagttatttcttttggaaacttgttgcatccactcttgtggatattaaatatactgtagtatagtattgatgtaataac--Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|8403502|gb|BE059136.1|BE059136EST: GAGACAAAGTTGTACTATACTTTCAACCATGTGGATGGTTTGG GGCTGGTCGCTATGAAGTAGATGGATATGTTTATAATTCTGCTGAGGAGCC
genomic: GAGACAAAGTTGTACTATACTTTCAACCATGTGGATGGTTTGGgtatgtaaca ... tatcttgcagGGCTGGTCGCTATGAAGTAGATGGATATGTTTATAATTCTGCTGAGGAGCC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTGGCCGAACATGGATTGATTCACCTGGGGAGATGATAATGACAAACTTGACAACTGGAGACAAAGTTGTACTATACTTTCAACCATGTGGATGGTTTGGgtatgtaacatcattttcttgtattgtttttcaattaaaacatttgtgattggtttgtaataatactatattggatttatattaaacttgtggacaatta
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA