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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAATGTGTCCCTGAAGATGCAATCAACTTTATTGTCTCAACTTTTTTTGATCAAGTTGTGACACTATCAACCCATCCATATGGTTGCCGGGTGATACAGgtaagattttttcagtgcttatgttactccttttgcatacctaaaatccctgaacttatcataattatcttttgcatgacag

Basic information

species Glycine max
transcript GLYMA15G04060.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G04060.2 (Glycine max), 5'ss of exon 7
lower sequence: Vv06s0004g05100.t01 (Vitis vinifera), 5'ss of exon 5
TGAATGTGTCCCTGAAGATGCAATCAACTTTATTGTCTCAACTTTTTTTGATCAAGTTGTGACACTATCAACCCATCCATATGGTTGCCGGGTGATACAGgtaagat-tttttcagtgcttatgttactccttttgcatacctaa----aatccctgaacttatcataatt---atcttttgcat-gacag---------
||||||||| ||||||||||| ||  | |||||  ||||||| || |||||||| |||||||| || ||||||||||||||||| || || ||||||||||| |||   |||| | ||||||| ||   | | |||       ||    ||  | | |        |  ||   || |||| ||| | ||          
TGAATGTGTTCCTGAAGATGCTATTCAGTTTATCATCTCAACATTCTTTGATCAGGTTGTGACCCTCTCAACCCATCCATATGGGTGTCGTGTGATACAGgttagaaactttttattgcttatcttttacatcttgagggttcaatttgaagacataaggaagaagtgcttccaatatttttcataggcaaagatcaaat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15201525|gb|BI424917.1|BI424917
EST:     ATCAAGTTGTGACACTATCAACCCATCCATATGGTTGCCGGGTGATACAG                         AGAGTACTGGAGCATTGCAAAGACCCTAACACCCAGCAAAAAGTTATGGAT
genomic: ATCAAGTTGTGACACTATCAACCCATCCATATGGTTGCCGGGTGATACAGgtaagatttt ... tgcatgacagAGAGTACTGGAGCATTGCAAAGACCCTAACACCCAGCAAAAAGTTATGGAT
EST: gi|21887773|gb|BQ740986.1|BQ740986
EST:     ATCAAGTTGTGACACTATCATTCCATCCATATGGTTGCCGGGTGATACAG                         AGAGTACTGGAGCATTGCAAAGACCCTAACACCCAGCAAAAAGTTATGGAT
genomic: ATCAAGTTGTGACACTATCAACCCATCCATATGGTTGCCGGGTGATACAGgtaagatttt ... tgcatgacagAGAGTACTGGAGCATTGCAAAGACCCTAACACCCAGCAAAAAGTTATGGAT
EST: gi|14205439|gb|BG839117.1|BG839117
EST:     ATCAAGTTGTGACACTATCAACCCATCCATATGGTTGCCGGGTGATACAG                         AGAGTACTGGAGCATTGCAAAGACCCTAACACCCAGCAAAAAGTTATGGAT
genomic: ATCAAGTTGTGACACTATCAACCCATCCATATGGTTGCCGGGTGATACAGgtaagatttt ... tgcatgacagAGAGTACTGGAGCATTGCAAAGACCCTAACACCCAGCAAAAAGTTATGGAT