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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCATGATGAGATTGTTTAGTCCACGCAAAACAACAATGTTGTTTGTCATACGTGATAAGACAAAGgtgtgacagcaaaatgttgctgcttgttttgataattctaaatattttcctgtatttcattttttattgtttatatatctttatttactatgtggttaaccttttcctttcgtag

Basic information

species Glycine max
transcript GLYMA15G02780.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G02780.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os01g39310.3 (Oryza sativa), 5'ss of exon 7
GTCATGATGAGATTGTTTAGTCCACGCAAAACAACAATGTTGTTTGTCATACGTGATAAGACAAAGgtgtgacagcaaaatgttgctgcttgttttgataatt--ctaaatattttcctgtatttc-attttttattgtttatatatctttatttactatgtggttaaccttttcctttcgtag----------
|| |||||||||||||| |||||||| ||||| ||| |||||||||| || ||||||||  |||||||| |        | | |||   ||    || || ||  || |  |  | || | | | | | | |  | |    ||  |  | ||| ||||  |    |||| | | ||  |    |          
GTTATGATGAGATTGTTCAGTCCACGTAAAACGACATTGTTGTTTGTTATTCGTGATAAATCAAAGgtgagggcttgctagggtgcaatttaggctgttagtttcctgagaaactaccagcagtcctactatgaactccaaatccaaatctatgtact--gcaactaacatgtgcccatttcggtttacaacag

upper sequence: GLYMA15G02780.1 (Glycine max), 5'ss of exon 7
lower sequence: AC196426.3_FGT007 (Zea mays), 5'ss of exon 6
GTCATGATGAGATTGTTTAGTCCACGCAAAACAACAATGTTGTTTGTCATACGTGATAAGACAAAGgtgtgacagcaaaatgttgctgcttgttttgataattctaaatattttcctgtatttcattttttattgtttatatatctttatttactatgtggttaaccttttcctttcgtag
||||||||||| ||||| ||||| |||||||||||| |||||||||| |||||||| ||  ||| |||         ||  | |  ||||||||         | |  || ||||||   |||||  ||| |||  || ||||       | ||||| ||| |    ||    | | | ||
GTCATGATGAGGTTGTTCAGTCCTCGCAAAACAACATTGTTGTTTGTTATACGTGACAAATCAAGGgt---------aagggct--tgcttgttacatgtgaacaatctactttcct---tttcacatttgatttcttgtatac------taactat-tggctccttttggtttcttgcag

upper sequence: GLYMA15G02780.1 (Glycine max), 5'ss of exon 7
lower sequence: AT1G72960.1 (Arabidopsis thaliana), 5'ss of exon 7
GTCATGATGAGATTGTTTAGTCCACGCAAAACAACAATGTTGTTTGTCATACGTGATAAGACAAAGgtgtgacagcaaaatgttgctgcttgttttgataattctaaatattttcctgtatttcattttttattgtttatatatctttatttact-atgtggttaaccttttcctttcgtag
|| |||||| |||||||||||||||| |||||||||||| ||||||| ||||| ||||| ||   |||       ||   | ||  |  || |||  || |||||   ||  || | |  ||  |     ||     || ||| | || | || | |||   ||  |               
GTGATGATGCGATTGTTTAGTCCACGTAAAACAACAATGCTGTTTGTAATACGAGATAAAACCCGGgta------cactctcttcttttttctttgtatcattcttcttacattgcagatttgtaacagctaactggtacata-cattgtctattgatgattttggctgcag----------

upper sequence: GLYMA15G02780.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv09s0002g02200.t01 (Vitis vinifera), 5'ss of exon 7
GTCATGATGAGATTGTTTAGTCCACGCAAAACAACAATGTTGTTTGTCATACGTGATAAGACAAAGgtgtgacagcaaaatgttgc--tgcttgttttgataattctaaatattttcctgtatttcattttttattgtttatatatctttatttactatgtggttaaccttttcctttcgtag-------------------
|| |||||| |||||||||||||||| ||||||||  || ||||||| || |||||||| |||| ||||||    |    |  |||  |  ||| | | ||| | | |   ||   |  |||||| | || |   ||||| | | | |   |    |||   | | | ||   | ||  ||                     
GTTATGATGCGATTGTTTAGTCCACGAAAAACAACTTTGATGTTTGTTATTCGTGATAAAACAAGGgtgtgttttctctcttgtgccttatttgatgttatagtgcgagggatag-ctagtattttagttgt--atgtttgtttgtttaagtgagatattaaggtgagctgaactttaagtgctgattttttttgtatacag