Sequence
atgc intronic sequence ATGC exonic sequenceTCAGCTGATGATTTGCGAATAAATCTTTGGAACCTGGAAATTAGCAATCAAAGTTTTAATATTGTTGATGTAAAGCCTGCAAATATGGAGGATCTGACAGgtaagcttgataagaaaaattatcctttagtgtatacattatcagtatcagggtaaaactctaaaattaattaatttatatagttcgagaaataattgca...
Basic information
species | Glycine max |
transcript | GLYMA15G02640.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA15G02640.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os02g13110.2 (Oryza sativa), 5'ss of exon 7
TCAGCTGATGATTTGCGAATAAATCTTTGGAACCTGGAAATTAGCAATCAAAGTTTTAATATTGTTGATGTAAAGCCTGCAAATATGGAGGATCTGACAGgtaagcttg-----ataagaaaaattat-cctttagtgtatacattatcagtatcagggtaaaactctaaaattaatta-atttatatagttcgagaaataattgca
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TCAGCAGATGATCTGCGAATAAATCTTTGGAACCTGGAAATTAGCAACCAAAGCTTTAATATTGTTGATGTGAAGCCTGCAAACATGGAGGACCTAACTGgtaaattttccagtgtgagataagctaggcatgctgtggatttgccatttggcttccagttagttttaaatgttaaacacacgaatgctatctaattggt-------
upper sequence: GLYMA15G02640.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os01g41630.1 (Oryza sativa), 5'ss of exon 7
TCAGCTGATGATTTGCGAATAAATCTTTGGAACCTGGAAATTAGCAATCAAAGTTTTAATATTGTTGATGTAAAGCCTGCAAATATGGAGGATCTGACAGgta-agcttgataagaaaaattatcctttagtgtatacattatcagtatcagggtaaaactctaaaattaattaatttatatagttcgagaaataattgca---------
||||| ||||||||||| |||||||||||||| ||||||||||||| ||||||||||| ||| ||||||| || ||| |||| |||||||| ||||| |||| | ||| | | | | | |||| ||| | | | ||| || | || | || | || | | | | | | |||| || ||||
TCAGCAGATGATTTGCGGATAAATCTTTGGAATTTGGAAATTAGCAACCAAAGTTTTAACATTATTGATGTTAAACCTACAAACATGGAGGACCTGACTGgtataactt--tcaaatcttcaaactcttagc-tatgc-tgactagtg--agtattaacatatacagcctttt--ctcacacaat--gggaaaaaaatgcagtcctatat
upper sequence: GLYMA15G02640.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G142334_T02 (Zea mays), 5'ss of exon 7
TCAGCTGATGATTTGCGAATAAATCTTTGGAACCTGGAAATTAGCAATCAAAGTTTTAATATTGTTGATGTAAAGCCTGCAAATATGGAGGATCTGACAGgtaagcttgataag---aaaaattatcctttag-tgtatacattatcagtat--cagggtaaaactctaaaattaattaatttatatagttcgagaaataattgca
||||||||||||||||| |||||||||||||| ||||||| |||||||||||||| |||||| ||||||| |||||| |||| ||||| ||||| || |||| | || | ||| ||| || ||| ||||| || | ||| | | | | ||| ||| || ||||| || |||| |
TCAGCTGATGATTTGCGGATAAATCTTTGGAATTTGGAAATCAGCAATCAAAGTTTCAATATTATTGATGTTAAGCCTACAAACATGGAAGATCTCACTGgtataacttccaaacctacaaagtatttcctatctgtgctgattatgtgtgtgataggtcatagatgtgaaaataagaaa---atata-ctcaagaagttgcaa--
upper sequence: GLYMA15G02640.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G164185_T02 (Zea mays), 5'ss of exon 7
TCAGCTGATGATTTGCGAATAAATCTTTGGAACCTGGAAATTAGCAATCAAAGTTTTAATATTGTTGATGTAAAGCCTGCAAATATGGAGGATCTGACAGgtaagcttgataaga--aaaattatcctttagtgtatacattatcagtat--cagggtaaaactctaaaattaattaatttatatagttcgagaaataattgca
||||||||||||||||| |||||||| ||||| ||||||| |||||||||||||| |||||| ||||||| |||||| |||| ||||| ||||| || |||| | ||| | || | ||| ||| ||||| || | ||| | | | | ||| || || || ||| | || | ||
TCAGCTGATGATTTGCGGATAAATCTATGGAATTTGGAAATCAGCAATCAAAGTTTCAATATTATTGATGTTAAGCCTACAAACATGGAAGATCTCACCGgtataacttctaaacctacaaactttcttatctgtgctgattatgtgtgtgataggtcataggtgtgaaagaaaata---tacataagggaacaagttgtttt-
upper sequence: GLYMA15G02640.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G069631_T02 (Zea mays), 5'ss of exon 7
TCAGCTGATGATTTGCGAATAAATCTTTGGAACCTGGAAATTAGCAATCAAAGTTTTAATATTGTTGATGTAAAGCCTGCAAATATGGAGGATCTGACAGgtaagcttgata-agaaaaattatcctttagtgtatacatta---tcagtatcagggtaaaactctaaaattaattaatttatatagttcgagaaataattgca
||||| |||||| |||||||||| |||||||| | |||||||||||||| || ||||| ||||||||||| || |||||||| ||||||||||| || ||||| ||| | || || | || || | || | | | | |||| ||| ||| | | || ||| | | | || |
TCAGCAGATGATCTGCGAATAAACCTTTGGAATTTAGAAATTAGCAATCAGAGCTTTAACATTGTTGATGTGAAACCTGCAAACATGGAGGATCTAACTGgtaaacttttttcagtctgataactaattgcggtgtgcactgagcttcctgtttcctgtaaacattaatgtta-tcagactaggtagattcacagtcaagt---
upper sequence: GLYMA15G02640.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G165418_T02 (Zea mays), 5'ss of exon 8
TCAGCTGATGATTTGCGAATAAATCTTTGGAACCTGGAAATTAGCAATCAAAGTTTTAATATTGTTGATGTAAAGCCTGCAAATATGGAGGATCTGACAGgtaagcttgataagaaaaattatcctttagtgtatacattatcagtatcagggtaaaactctaaaattaattaatttatatagttcgagaaataattgca-
||||| |||||| | ||||||||| | |||||| ||||||| | || || || ||||| ||||||||||| |||||| |||| ||||| ||||| |||||||| | || | | | | |||| | || || || || | | | || || | | | || ||||||
TCAGCAGATGATCTCCGAATAAATTTATGGAACTTGGAAATAAACAGCCAGAGCTTTAACATTGTTGATGTGAAGCCTACAAACATGGAAGATCTAACAGgtaattccacttagtcataat-ttttttaacatttatcctaagtgttgcaaatttacttgatgaagttttgccttcccatttaacaaaaaagagattgcaa
upper sequence: GLYMA15G02640.1 (Glycine max), 5'ss of exon 7
lower sequence: AT1G17720.2 (Arabidopsis thaliana), 5'ss of exon 7
TCAGCTGATGATTTGCGAATAAATCTTTGGAACCTGGAAATTAGCAATCAAAGTTTTAATATTGTTGATGTAAAGCCTGCAAATATGGAGGATCTGACAGgtaagcttgataagaaaaattatc---ctttagtgtatacattatcagtatcagggtaaaactctaaaattaattaatttatatagttcgagaaataattgca---------------------------------------------
|| ||||||||| ||||| ||||||| ||||| ||||||||||||| || ||||| |||||||||||||| ||||| |||| |||||||| | || |||| ||| | | || | ||| | | || | | | || | | || | || | | || ||| | | |
TCGGCTGATGATCTGCGAGTAAATCTCTGGAATTTGGAAATTAGCAACCAGAGTTTCAATATTGTTGATGTTAAGCCCACAAACATGGAGGACTTAACTGgtatgctacttctcctattttgttagatgttactttgtatggtcttaccattgattcatatgtcaacaacctccttacttttattatctatttttttcacgtttactgcttgtcgagcatgcttctaaatgctacatggtctgtgcag
upper sequence: GLYMA15G02640.1 (Glycine max), 5'ss of exon 7
lower sequence: AT1G51690.3 (Arabidopsis thaliana), 5'ss of exon 9
TCAGCTGATGATTTGCGAATAAATCTTTGGAACCTGGAAATTAGCAATCAAAGTTTTAATATTGTTGATGTAAAGCCTGCAAATATGGAGGATCTGACAGgtaagcttgataagaaaaattatcctttagtgtatacattatcagtatcagggtaaaactctaaaat-taattaatttatatagttcgagaaataattgca----------------
|| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||| || ||||| ||||| | ||||||| | | ||||| | ||| || | || || | | |||| | || || |||| | ||| ||| | | |
TCTGCTGATGATTTGCGAATTAATCTTTGGAATCTGGAAATTAGCAATCAAAGTTTCAATATTGTTGATGTCAAGCCTGCGAAAATGGAAGATCTATCTGgtaagccttg-gtctactgttatc--tcagtcta-atatgttctcttatacggtacccatttatcatgcaattggatgcgatatccttcgaatttacgaccatattcgttcatgcag
upper sequence: GLYMA15G02640.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv09s0002g02470.t01 (Vitis vinifera), 5'ss of exon 7
TCAGCTGATGATTTGCGAATAAATCTTTGGAACCTGGAAATTAGCAATCAAAGTTTTAATATTGTTGATGTAAAGCCTGCAAATATGGAGGATCTGACAGgtaagcttgataagaaaaattatcc----tttagtgtatacattatcagtatcagg-gtaaaactctaaaattaattaatttatatagttcgagaaataattgca
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TCAGCTGATGATCTGCGAATAAACCTTTGGAACTTGGAAATTAGCAACCAAAGCTTCAATATTGTTGATGTGAAGCCTGCAAATATGGAGGATCTAACTGgtaaaattattactaattatcttctgatattcagt-tatactctgtgtgtattttgtgtgtcttttccaaggcactt--ttaatatatttgctaaattgacct--Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|11274020|gb|BF324388.1|BF324388EST: AGTTTTAATATTGTTGATGTAAAGCCCTGC-AATATGGAGGATCTGACAG AGGTTATAACATCAGCAGAATTTCACCCTACACATTGTAATACGTTGGCAT
genomic: AGTTTTAATATTGTTGATGTAAAG-CCTGCAAATATGGAGGATCTGACAGgtaagcttga ... attattgcagAGGTTATAACATCAGCAGAATTTCACCCTACACATTGTAATACGTTGGCAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCAGCTGATGATTTGCGAATAAATCTTTGGAACCTGGAAATTAGCAATCAAAGTTTTAATATTGTTGATGTAAAGCCTGCAAATATGGAGGATCTGACAGgtaagcttgataagaaaaattatcctttagtgtatacattatcagtatcagggtaaaactctaaaattaattaatttatatagttcgagaaataattgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagaaaaa