1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
CACCTCAAAGATTGTTGATAGCATTCAGGACCGGGGAATTAATCAGGTTTATATACTTGGAGGATATGGAACTCAGTATGAAGCAGCTATGATTTTTGAGgtaattaataaatagactaggtttgagtgctgatattcagtttgctataactttgtatttgttttaatgatctactgacaaactaacttgatgataacatatgctctaaaagtttggtagatataataattttcactatttaaatttgtactcacaagattaagttatttatgcag
species | Glycine max |
transcript | GLYMA15G02400.2 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GTATGAAGCAGCTATGATTTTTGAG GAAGTTAGAAGGCGTGGCTTGAAAGTTGCAGTGGTCGGAATTCCAAAAACTEST: gi|151406712|gb|EV276527.1|EV276527
genomic: GTATGAAGCAGCTATGATTTTTGAGgtaattaata ... atttatgcagGAAGTTAGAAGGCGTGGCTTGAAAGTTGCAGTGGTCGGAATTCCAAAAACT
EST: GGAGGATATGGAACTCAGTATG-AGCAGCTATGATTTTTGAG GAAGTTAGAAGGCGTGGCTTGAAAGTTGCAGTGGTCGGAATTCCAAAAACT
genomic: GGAGGATATGGAACTCAGTATGAAGCAGCTATGATTTTTGAGgtaattaata ... atttatgcagGAAGTTAGAAGGCGTGGCTTGAAAGTTGCAGTGGTCGGAATTCCAAAAACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CACCTCAAAGATTGTTGATAGCATTCAGGACCGGGGAATTAATCAGGTTTATATACTTGGAGGATATGGAACTCAGTATGAAGCAGCTATGATTTTTGAGgtaattaataaatagactaggtttgagtgctgatattcagtttgctataactttgtatttgttttaatgatctactgacaaactaacttgatgataacatatgctctaaaagtttggtagatataataattttcactatttaaatttgtactcacaagattaagttatttatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT