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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACTTTGGATGCTCATCAGAAAGGAGTGAATTGTGTTGATTATTTTACAGGTGGTGACAAACCATATCTAATCACTGGTTCTGATGATCACACTGCTAAGgttttgttttcatttgttgcttaatctatctgcttgtcgcgcacacgcacacacacacatgtatgaaaaggaataacatggatgaaacttacgaatcag

Basic information

species Glycine max
transcript GLYMA15G01680.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G01680.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os06g05180.2 (Oryza sativa), 5'ss of exon 7
TACTTTGGATGCTCATCAGAAAGGAGTGAATTGTGTTGATTATTTTACAGGTGGTGACAAACCATATCTAATCACTGGTTCTGATGATCACACTGCTAAGgttttgttttcatttgttgcttaatctatctgcttgtcgcgcacacgcacacacacacatgtatgaaaaggaataacatgg-atgaaacttacgaatcag
 ||  | ||||  ||||| || || ||||| |||||||| || || || ||||||||||  || ||| | |||||||||||||||||   |||||| |||||||| ||||              ||||||  ||| | | |    | ||   |  |||   | ||   ||   ||| ||||  ||    |   ||| |||
CACACTCGATGGACATCAAAAGGGTGTGAACTGTGTTGACTACTTCACTGGTGGTGACAGGCCCTATTTGATCACTGGTTCTGATGACTCCACTGCAAAGgttttttttt--------------tctatccactt-ttgagtgttc-caagtatccacgattctgtgcagtcctaagatggtgtggtcatggtgaaccag

upper sequence: GLYMA15G01680.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G141587_T01 (Zea mays), 5'ss of exon 7
TACTTTGGATGCTCATCAGAAAGGAGTGAATTGTGTTGATTATTTTACAGGTGGTGACAAACCATATCTAATCACTGGTTCTGATGATCACACTGCTAAGgttttgttttcatttgttgc-ttaatctatctgcttgtcgcgcacacgcacacacacacatgtatgaaaaggaataacatggatgaaacttacgaatcag
 ||  | ||||  |||  |||||| ||||| ||||||||||| || || |||||||||  ||||||  |||| ||||| ||||||||||| ||||| |||||||     |||| || |||  | |  | |   | ||| |    || |||  ||| |     | |||  |     |  || | | |||            
CACACTAGATGGCCATTCGAAAGGTGTGAACTGTGTTGATTACTTCACTGGTGGTGACCGACCATACTTAATTACTGGCTCTGATGATCAGACTGCAAAGgtttg----tcatatgatgcactgaattgtactcctgtggt---catgcatgcactc-----tgtgatga----cattattggtcaaatcag--------

upper sequence: GLYMA15G01680.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G124886_T04 (Zea mays), 5'ss of exon 7
TACTTTGGATGCTCATCAGAAAGGAGTGAATTGTGTTGATTATTTTACAGGTGGTGACAAACCATATCTAATCACTGGTTCTGATGATCACACTGCTAAGgttttgttttcatttgttgcttaatctatctgcttgtcgcgcacacgcacacacacacatgtatgaaaaggaataacatggatgaaacttacgaatcag
 ||  | ||||  |||   ||||| ||||| ||||||||||| || || ||||||||   |||||| ||||| ||||| ||||||||||| ||||| |||||||     ||||  |   || |||    || ||    | |  || |     || |   ||||     | ||  |  || ||| |||            
CACACTAGATGGCCATTCCAAAGGTGTGAACTGTGTTGATTACTTCACTGGTGGTGATCGACCATACCTAATTACTGGCTCTGATGATCAGACTGCAAAGgtttg----tcataagc-actgaattgtactcct----gtgatcatgtctgtactc---tgtacactgatga-cattattgatcaaatcag--------

upper sequence: GLYMA15G01680.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G443953_T01 (Zea mays), 5'ss of exon 8
TACTTTGGATGCTCATCAGAAAGGAGTGAATTGTGTTGATTATTTTACAGGTGGTGACAAACCATATCTAATCACTGGTTCTGATGATCACACTGCTAAGgttt--tgttttcatttgt-tgcttaatctatctgcttgtcgcgcacacgcacacacacacatgtatgaaaaggaataacatggatgaaacttacgaatcag
 || ||||||| ||||   ||||| || |||||||||||||| || || |||||||||   ||||||||||| || || |||||||| || ||||| ||||| |    | ||||||||      | | |  | ||    |   |   ||  |       || || || |                                 
CACATTGGATGGTCATTCAAAAGGTGTCAATTGTGTTGATTACTTCACTGGTGGTGACCGGCCATATCTAATTACAGGCTCTGATGACCAAACTGCAAAGgtatgacatgttcatttgcacatatgagcattttggacattatg---actgattggttaacttgaattag--------------------------------

upper sequence: GLYMA15G01680.1 (Glycine max), 5'ss of exon 7
lower sequence: AT1G52360.1 (Arabidopsis thaliana), 5'ss of exon 7
TACTTTGGATGCTCATCAGAAAGGAGTGAATTGTGTTGATTATTTTACAGGTGGTGACAAACCATATCTAATCACTGGTTCTGATGATCACACTGCTAAGgttttgttttcatttgttgcttaatctatctgcttgtcgcgcacacgcacacacacacatgtatgaaaaggaataacatggatgaaacttacgaatcag
||| |||||||| |||||||||||||| |||||||| |||||||| || |||||||| || || ||| |||| || || ||||||||||||||||||||||| |   |    ||   ||     ||| | |  |||   |       |        |  ||  |  |    | | || | | ||||  |   |||||||
TACATTGGATGCCCATCAGAAAGGAGTAAATTGTGTAGATTATTTCACCGGTGGTGATAAGCCCTATTTAATTACCGGCTCTGATGATCACACTGCTAAGgtatgcctcctgttcaatg----gtct-tttagttgatacatttctactggacattatgtgctttcaggttatttac-tagttgaatttcgtgaatcag

upper sequence: GLYMA15G01680.1 (Glycine max), 5'ss of exon 7
lower sequence: AT1G79990.1 (Arabidopsis thaliana), 5'ss of exon 11
TACTTTGGATGCTCATCAGAAAGGAGTGAATTGTGTTGATTATTTTACAGGTGGTGACAAACCATATCTAATCACTGGTTCTGATGATCACACTGCTAAGgttt-tgttttcatttgttgcttaatctatctgcttgtcgc-gcacacgcacacacacacatgtatgaaaaggaataacatggatgaaacttacgaatcag-------------------------------------------
|||||||||||| ||||  ||||| || || ||||| || || ||||| ||||| || |||||||| ||||||||||||||||||||||| ||||||||||| | |  |    ||| ||||||  | |    | |  | ||  || | |    |    |  | | |  |   | ||    || ||  |  || ||     |                                           
TACTTTGGATGCACATCTCAAAGGGGTAAACTGTGTAGACTACTTTACTGGTGGGGATAAACCATACCTAATCACTGGTTCTGATGATCATACTGCTAAGgtctgtactgagctttcttgcttc-tttgcaagttgtttgctacatatgtgtgcttgtatgtatctccatttgtattgtttgtatataggtt-cgtgcagggttttctgtttgtatattgttcataaatttcttctggaagcag

upper sequence: GLYMA15G01680.1 (Glycine max), 5'ss of exon 7
lower sequence: AT3G15980.3 (Arabidopsis thaliana), 5'ss of exon 7
TACTTTGGATGCTCATCAGAAAGGAGTGAATTGTGTTGATTATTTTACAGGTGGTGACAAACCATATCTAATCACTGGTTCTGATGATCACACTGCTAAGgttttgttttcatttgttgcttaatctatctgcttgtcgcgcacacgcacacacacacatgtatgaaaaggaataacatggatgaaacttacgaatcag
|||  |||||||||||||||||||||| || ||||| |||||||| ||||| ||||| ||||| |||||||| || || ||||||||||| ||||||||||| |  || |  ||        ||| | | |||||     |    | |  | |   |  | | || | |    | ||  |  ||  ||||     ||||
TACACTGGATGCTCATCAGAAAGGAGTCAACTGTGTAGATTATTTCACAGGGGGTGATAAACCCTATCTAATTACCGGCTCTGATGATCATACTGCTAAGgtatgcttctggttaagcttccaatatctgtgctt----tgattcccctgagaattatgtatttgcagatcgtttactag--tggtactttt---tcag

upper sequence: GLYMA15G01680.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv11s0016g04180.t01 (Vitis vinifera), 5'ss of exon 7
TACTTTGGATGCTCATCAGAAAGGAGTGAATTGTGTTGATTATTTTACAGGTGGTGACAAACCATATCTAATCACTGGTTCTGATGATCACACTGCTAAGgttttgttttcat--ttgttgcttaatctatctgcttgtcgcgcacacgcacacacacacatgtatgaaaaggaataacatggatgaaacttacgaatcag
|||||||||||  ||   |||||| || || ||||||||||| || || ||||||||||| |||||  ||||||| |||||||||||||| ||||| ||||| ||  | | ||  || |||  |||  || || |   |   |  ||  |      |    | | ||  |   |||    | | || |||           
TACTTTGGATGACCACATGAAAGGGGTAAACTGTGTTGATTACTTCACTGGTGGTGACAAGCCATACTTAATCACGGGTTCTGATGATCAAACTGCCAAGgtgtttatctgatgcttattgactaaa-tagcttccatttatgtgcattccatttgattactttctgtgattaaat---tttggtggaacag---------

upper sequence: GLYMA15G01680.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv09s0002g04810.t01 (Vitis vinifera), 5'ss of exon 7
TACTTTGGATGCTCATCAGAAAGGAGTGAATTGTGTTGATTATTTTACAGGTGGTGACAAACCATATCTAATCACTGGTTCTGATGATCACACTGCTAAGgttttgttttcatttgttgcttaatctatctgcttgtcgcgcacacgcacacacacacatgtatgaaaaggaataa-catggatgaaacttacgaat-cag
|||  ||||||| ||||||||||| || |||||||||||||| |||||||| ||||| ||||||||||||||||| |||||||||||||| ||||||||||| |    || ||          |  ||| | |  |  | |   | | |   |  |   |  ||  || | |||   ||||||  || | | | ||| |||
TACACTGGATGCCCATCAGAAAGGGGTAAATTGTGTTGATTACTTTACAGGCGGTGATAAACCATATCTAATCACGGGTTCTGATGATCATACTGCTAAGgtctgccgttgat----------aattattttcaagctgtgttta-gtatttatgcggtttgatagaaggaaatgttcatggacaaatcctccaaatgcag

upper sequence: GLYMA15G01680.1 (Glycine max), 5'ss of exon 7
lower sequence: PP1S61_1V6.1 (Physcomitrella patens), 5'ss of exon 7
TACTTTGGATGCTCATCAGAAAGGAGTGAATTGTGTTGATTATTTTACAGGTGGTGACAAACCATATCTAATCACTGGTTCTGATGATCACACTGCTAAGgttttgttttcattt-----gttgcttaatcta--tctgcttgtcgcgcacacgcacacacacacatgtatgaaa-----aggaataacatggatgaaacttacgaatcag----------------------------------------------------------------------------------
 ||| | || |||||||||||||||||||||||||| || || ||||  ||||||||   ||| ||||| || |||||||| |||||||| ||||| |||||  ||  || || |     |||||| |   ||  ||| |  |||      ||  | | ||     | ||| |        ||| |  ||||  |   | ||  ||   ||                                                                                  
CACTCTAGAGGCTCATCAGAAAGGAGTGAATTGTGTCGAATACTTTAGTGGTGGTGATCGACCTTATCTCATAACTGGTTCAGATGATCAAACTGCCAAGgtaatgactttatcttgtctgttgctaatcttaattctccaggtcaatataactgaaagacttggttctataaggctttcgggatttgcatgagtatcatttttgacatagcatgacttactgtaatccatgttcgattaaatgtattctgatgtgtagttcagtaacttacaattttttccttgtcgggcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208112800|gb|GD908759.1|GD908759
EST:     GTGGTGACAAACCATATCTAATCACTGGTTCTGATGATCACACTGCTAAG                         GTATGGGATTATCAGACCAAAAGTTGTGTCCAGACCCTAGAAGGTCACACA
genomic: GTGGTGACAAACCATATCTAATCACTGGTTCTGATGATCACACTGCTAAGgttttgtttt ... tacgaatcagGTATGGGATTATCAGACCAAAAGTTGTGTCCAGACCCTAGAAGGTCACACA