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TTCAGAAGATACATGGAATGAACCACTTGGACGAGGAACTGAGATTAGATTACACCTCAAGGAAGAGGCTGGGGAATACTTGGAGGAGTCTAAACTGAAAgtatacatcaacctattaccttaattatttataagttattcgagtttaaaatttcctgtcttctagtctccttcacatagtttacacttaggggtcattt...
species | Glycine max |
transcript | GLYMA14G40320.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TACACCTCAAGGAAGAGGCTGGGGAATACTTGGAGGAGTCTAAACTGAAA GAATTGGTGAAGAGATACTCTGAATTTATTAACTTCCCTATCTATATTTGGEST: gi|298173461|gb|HO016797.1|HO016797
genomic: TACACCTCAAGGAAGAGGCTGGGGAATACTTGGAGGAGTCTAAACTGAAAgtatacatca ... tttttcacagGAATTGGTGAAGAGATACTCTGAATTTATTAACTTCCCTATCTATATTTGG
EST: TGGGGAATACTTGGAGGAGTCTAAACTGAAA GAATTGGTGAAGAGATACTCTGAATTTATTAACTTCCCTATCTATATTTGGEST: gi|58019806|gb|CX706548.1|CX706548
genomic: TGGGGAATACTTGGAGGAGTCTAAACTGAAAgtatacatca ... tttttcacagGAATTGGTGAAGAGATACTCTGAATTTATTAACTTCCCTATCTATATTTGG
EST: ACACNNTCAAGGAAGAGGCTGGGGAATACTTGGAGGAGTCTAAACTGAAA GAATTGGTGAAGAGATACTCTGAATTTATTAACTTCCCTATCTATATTTGGEST: gi|163922973|gb|EH039569.1|EH039569
genomic: ACAC-CTCAAGGAAGAGGCTGGGGAATACTTGGAGGAGTCTAAACTGAAAgtatacatca ... tttttcacagGAATTGGTGAAGAGATACTCTGAATTTATTAACTTCCCTATCTATATTTGG
EST: TACACCTCAAGGAAGAGGCTGGGGAGTACTTGGAGGAGTCTAAACTGAAA GAATTGGTGAAGAGATACTCTGGATTTATTAACTTCCCTATCTATATTTGGEST: gi|298194890|gb|HO043362.1|HO043362
genomic: TACACCTCAAGGAAGAGGCTGGGGAATACTTGGAGGAGTCTAAACTGAAAgtatacatca ... tttttcacagGAATTGGTGAAGAGATACTCTGAATTTATTAACTTCCCTATCTATATTTGG
EST: TACACCTCAAGGAAGAGGCTGGGGAATACTTGGAGGAGTCTAAACTGAAA GAATTGGTGAAGAGATACTCTGAATTTATTAACTTCCCTATCTATATTTGGEST: gi|193663124|gb|FK601014.1|FK601014
genomic: TACACCTCAAGGAAGAGGCTGGGGAATACTTGGAGGAGTCTAAACTGAAAgtatacatca ... tttttcacagGAATTGGTGAAGAGATACTCTGAATTTATTAACTTCCCTATCTATATTTGG
EST: TACACCTCAAGGAAGAGGCTGGGGAATACTTGGAGGAGTCTAAACTGAAA GAATTGGTGAAGAGATACTCTGAATTTATTAACTTCCCTATCTATATTTGGEST: gi|193710049|gb|FK643349.1|FK643349
genomic: TACACCTCAAGGAAGAGGCTGGGGAATACTTGGAGGAGTCTAAACTGAAAgtatacatca ... tttttcacagGAATTGGTGAAGAGATACTCTGAATTTATTAACTTCCCTATCTATATTTGG
EST: TACACCTCAAGGAAGAGGCTGGGGAATACTTGGAGGAGTCTAAACTGAAA GAATTGGTGAAGAGATACTCTGAATTTATTAACTTCCCTATCTATATTTGGEST: gi|207817171|gb|GD786374.1|GD786374
genomic: TACACCTCAAGGAAGAGGCTGGGGAATACTTGGAGGAGTCTAAACTGAAAgtatacatca ... tttttcacagGAATTGGTGAAGAGATACTCTGAATTTATTAACTTCCCTATCTATATTTGG
EST: GGCTGGGGAATACTTGGAGGAGTCTAAACTGAAA GAATTGGTGAAGAGATACTCTGAATTTATTAACTTCCCTATCTATATTTGGEST: gi|208219473|gb|GE020571.1|GE020571
genomic: GGCTGGGGAATACTTGGAGGAGTCTAAACTGAAAgtatacatca ... tttttcacagGAATTGGTGAAGAGATACTCTGAATTTATTAACTTCCCTATCTATATTTGG
EST: TACACCTCAAGGAAGAGGCTGGGGAGTACTTGCAGGAGTCTAAACTGAAA GAATTGGCGAAGAGATACTCTGAATTTATTAACTTCCCTATCTATATTTGGEST: gi|254328195|gb|GR835160.1|GR835160
genomic: TACACCTCAAGGAAGAGGCTGGGGAATACTTGGAGGAGTCTAAACTGAAAgtatacatca ... tttttcacagGAATTGGTGAAGAGATACTCTGAATTTATTAACTTCCCTATCTATATTTGG
EST: TACACCTCAAGGAAGAGGCTGGGGAATACTTGGAGGAGTCTAAACTGAAA GAATTGGTGAAGAGATACTCTGAATTTATTAACTTCCCTATCTATATTTGG
genomic: TACACCTCAAGGAAGAGGCTGGGGAATACTTGGAGGAGTCTAAACTGAAAgtatacatca ... tttttcacagGAATTGGTGAAGAGATACTCTGAATTTATTAACTTCCCTATCTATATTTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCAGAAGATACATGGAATGAACCACTTGGACGAGGAACTGAGATTAGATTACACCTCAAGGAAGAGGCTGGGGAATACTTGGAGGAGTCTAAACTGAAAgtatacatcaacctattaccttaattatttataagttattcgagtttaaaatttcctgtcttctagtctccttcacatagtttacacttaggggtcattt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG