1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
TATTCACGGAATGTGAGTCAAACACGCTGGATCATTGATGATGAAAGAATGGGAGAAGCATCAGTTGAGgtactgtctattttggcaaatggttgtggtcctttatgtttccttttaatgttgattgtgaaaggtgacaacaagtgtgtacaattggttgtag
species | Glycine max |
transcript | GLYMA14G39890.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: AAACACGCTGGATCATTGATGATGAAAGAATGGGAGAAGCATCAGTTGAG GAAATAATTGGTGGAAACATCCTCCAAGCCTGCCAAGGTGATAGTTTTAAGEST: gi|14259851|gb|BG882759.1|BG882759
genomic: AAACACGCTGGATCATTGATGATGAAAGAATGGGAGAAGCATCAGTTGAGgtactgtcta ... ttggttgtagGAAATAATTGGTGGAAACATCCTCCAAGCCTGCCAAGGTGATAGTTTTAAG
EST: AAACACGCTGGATCATTGATGATGAAAGAATGGGAGAAGCATCAGTTGAG GAAATAATTGGTGGAAACATCCTCCAAGCCTGCCAAGGTGATAGTTTTAAGEST: gi|58017203|gb|CX703945.1|CX703945
genomic: AAACACGCTGGATCATTGATGATGAAAGAATGGGAGAAGCATCAGTTGAGgtactgtcta ... ttggttgtagGAAATAATTGGTGGAAACATCCTCCAAGCCTGCCAAGGTGATAGTTTTAAG
EST: AATGGGAGAAGCATCAGTTGAG GAAATAATTGGTGG-AACATTCTCCAAAGCCTGCCAAGGTGATAGTTTTAA
genomic: AATGGGAGAAGCATCAGTTGAGgtactgtcta ... ttggttgtagGAAATAATTGGTGGAAACATCCTCC-AAGCCTGCCAAGGTGATAGTTTTAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TATTCACGGAATGTGAGTCAAACACGCTGGATCATTGATGATGAAAGAATGGGAGAAGCATCAGTTGAGgtactgtctattttggcaaatggttgtggtcctttatgtttccttttaatgttgattgtgaaaggtgacaacaagtgtgtacaattggttgtag
- - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC