Skip to another splice site:
1  
 5'  3'   
2  
 5'  3'   
3  
 5'  3'   
4  
 5'  3'   
5  
 5'  3'   
6  
 5'  3'   
7  
 5'  3'   
8  
 5'  3'   
9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGCTGGAGATCGGCGAAGGACAGTTATGAGGCCTCCTCAAGTTCTTCGTGAGGGCACAAAGAAAACTGTGTTTGTCAATTTTATGGATCTATGCAAAACgtatgttaatattttatgctaaatgctgaatagttcagagtaatgtgatgaaagttgtttcacaaaacacttggccttgtttctgtgttttctgtatttt...

Basic information

species Glycine max
transcript GLYMA14G38600.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G38600.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv06s0004g08180.t01 (Vitis vinifera), 5'ss of exon 7
TTGCTGGAGATCGGCGAAGGACAGTTATGAGGCCTCCTCAAGTTCTTCGTGAGGGCACAAAGAAAACTGTGTTTGTCAATTTTATGGATCTATGCAAAACgtatgttaatatt-ttatgctaaatgctgaata-gttcagagtaatgtgatgaaagttgtttcacaaaacacttggccttgtttctgtgttttctgtatttt--
||||||||||| || | || |||||||||||||| || ||||| |||||||| ||||||||||||||||| ||||| || || |||||||| ||||| ||||||| | || || || |||| || || | | | | | | | | || | | | | | | | ||| | || | | ||||
TTGCTGGAGATAGGAGGAGAACAGTTATGAGGCCCCCACAAGTCCTTCGTGAAGGCACAAAGAAAACTGTTTTTGTGAACTTCATGGATCTGTGCAAGACgtatgctcatgttattttgcttcatctattttatatatatatttaattagcaagatttctgttgctcta-gcaagac--tgtatttgcactggata-atttcat

upper sequence: GLYMA14G38600.1 (Glycine max), 5'ss of exon 7
lower sequence: PP1S81_161V6.1 (Physcomitrella patens), 5'ss of exon 3
TTGCTGGAGATCGGCGAAGGACAGTTATGAGGCCTCCTCAAGTTCTTCGTGAGGGCACAAAGAAAACTGTGTTTGTCAATTTTATGGATCTATGCAAAACgtatgt--taatattttatgctaa-atgctgaatagttcagagtaatgtg-atgaaagttgtttcacaaaacacttggccttgtttctgtgttttctgtatttt
| || || || | | || |||||||||||||||| ||||| || || || || || || ||||| |||||||| |||||||| || ||||| |||||| | | || | || | | ||| || ||| | | | | ||| | | || | | | | ||| | | | ||
TGTCTACGGAGAGGAGGCGTACCATTATGAGGCCTCCTCAGGTTCTCCGAGAAGGAACTAAAAAGACTGTCTTTGTCAACTTTATGGACCTTTGCAAGACgtatatactttcatctcctgagactgttctgcattgttttgttttgtttctgtgatactcgtatagtgagtattgtattttcatttaaatatgtagagtg----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207815375|gb|GD786146.1|GD786146
EST:     AATTTTATGGATCTTATTGCAAAAC                         GATGCATCGGCAGCCAGACCATGTCATGGCCTTCTTGCTTGCTGAATTGG
genomic: AATTTTATGGATC-TA-TGCAAAACgtatgttaat ... ttttatatagGATGCATCGGCAGCCAGACCATGTCATGGCCTTCTTGCTTGCTGAATTGG
EST: gi|193595184|gb|FK553917.1|FK553917
EST:     GAGGGCACAAAGAAAACTGTGTTTGTCAATTTTATGGATCTATGCAAAAC                         GATGCATCGGCAGCCAGACCATGTCATGGCCTTCTTGCTTGCTGAATTGGG
genomic: GAGGGCACAAAGAAAACTGTGTTTGTCAATTTTATGGATCTATGCAAAACgtatgttaat ... ttttatatagGATGCATCGGCAGCCAGACCATGTCATGGCCTTCTTGCTTGCTGAATTGGG
EST: gi|151398862|gb|EV268733.1|EV268733
EST:     GAGGGCACAAAGAAAACTGTGTTTGTCAATTTTATGGATCTATGCAAAAC                         GATGCATCGGCAGCCAGACCATGTCATGGCCCTCTTGCTTGCTGAATTGGG
genomic: GAGGGCACAAAGAAAACTGTGTTTGTCAATTTTATGGATCTATGCAAAACgtatgttaat ... ttttatatagGATGCATCGGCAGCCAGACCATGTCATGGCCTTCTTGCTTGCTGAATTGGG
EST: gi|298182522|gb|HO031257.1|HO031257
EST:     GAGGGCACAAAGAAAACTGTGTTTGTCAATTTTATGGATCTATGCAAAAC                         GATGCATCGGCAGCCAGACCATGTCATGGCCTTCTTGCTCACTGAATTGGG
genomic: GAGGGCACAAAGAAAACTGTGTTTGTCAATTTTATGGATCTATGCAAAACgtatgttaat ... ttttatatagGATGCATCGGCAGCCAGACCATGTCATGGCCTTCTTGCTTGCTGAATTGGG
EST: gi|298164264|gb|HO013909.1|HO013909
EST:     GAGGGCACAAAGAAAACTGTGTTTGTCAATTTTATGGATCTATGCAAAAC                         GATGCATCGGCAGCCAGACCATGTCATGGCCTTCTTGCTTGCTGAATTGGG
genomic: GAGGGCACAAAGAAAACTGTGTTTGTCAATTTTATGGATCTATGCAAAACgtatgttaat ... ttttatatagGATGCATCGGCAGCCAGACCATGTCATGGCCTTCTTGCTTGCTGAATTGGG
EST: gi|208329511|gb|GE132576.1|GE132576
EST:     GAGGGCACAAAGAAAACTGTGTTTGTCAATTTTATGGATCTATGCAAAAC                         GATGCATCGGCAGCCAGACCATGTCATGGCCTTCTTGCTTGCTGAATTGGG
genomic: GAGGGCACAAAGAAAACTGTGTTTGTCAATTTTATGGATCTATGCAAAACgtatgttaat ... ttttatatagGATGCATCGGCAGCCAGACCATGTCATGGCCTTCTTGCTTGCTGAATTGGG
EST: gi|9983218|gb|BE657326.1|BE657326
EST:     GAGGGCACAAAGAAAACTGTGTTTGTCAATTTTATGGATCTATGCAAAAC                         GATGCATCGGCAGCCAGACCATGTCATGGCCTTCTTGCTTGCTGAATTGGG
genomic: GAGGGCACAAAGAAAACTGTGTTTGTCAATTTTATGGATCTATGCAAAACgtatgttaat ... ttttatatagGATGCATCGGCAGCCAGACCATGTCATGGCCTTCTTGCTTGCTGAATTGGG
EST: gi|192309791|gb|FG999920.1|FG999920
EST:     GAGGGCGCAAAGAAAACTGTGTTTGTCAATTTTATGGATCTATGCAAAAC                         GATGCATCGGCAGCCAGACCATGTCATGGCCTTCTTGCTTGCTGAATTGGG
genomic: GAGGGCACAAAGAAAACTGTGTTTGTCAATTTTATGGATCTATGCAAAACgtatgttaat ... ttttatatagGATGCATCGGCAGCCAGACCATGTCATGGCCTTCTTGCTTGCTGAATTGGG
EST: gi|192296247|gb|FG992263.1|FG992263
EST:     GAGGGCACAAAGAAAACTGTGTTTGTCAATTTTATGGATCTATGCAAAAC                         GATGCATCGGCAGCCAGACCATGTCATGGCCTTCTTGCTTGCTGAATTGGG
genomic: GAGGGCACAAAGAAAACTGTGTTTGTCAATTTTATGGATCTATGCAAAACgtatgttaat ... ttttatatagGATGCATCGGCAGCCAGACCATGTCATGGCCTTCTTGCTTGCTGAATTGGG
EST: gi|10235771|gb|BE804659.1|BE804659
EST:     GAGGGCATAAAGAAAACTGTGTTTGTCAATTTTATGGATCTATGCAAAAC                         GATGCATCGGCAGCCAGACCATGTCATGGCCTTCTTGCTTGCTGAATTGGG
genomic: GAGGGCACAAAGAAAACTGTGTTTGTCAATTTTATGGATCTATGCAAAACgtatgttaat ... ttttatatagGATGCATCGGCAGCCAGACCATGTCATGGCCTTCTTGCTTGCTGAATTGGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTGCTGGAGATCGGCGAAGGACAGTTATGAGGCCTCCTCAAGTTCTTCGTGAGGGCACAAAGAAAACTGTGTTTGTCAATTTTATGGATCTATGCAAAACgtatgttaatattttatgctaaatgctgaatagttcagagtaatgtgatgaaagttgtttcacaaaacacttggccttgtttctgtgttttctgtatttt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA