Sequence
atgc intronic sequence ATGC exonic sequenceTCGTGACTATGGTTGGATCAATAACATTCACCATGACATTGGCACCCATGTTATTCACCATCTTTTCCCTCAAATTCCTCATTATCACCTCGTTGAAGCGgtatattttactattattactcacctaaaaagaatgcaattagtacatttgttttatctcttggaagttagtcattttcagttgcatgattgtaatgttc...
Basic information
species | Glycine max |
transcript | GLYMA14G37350.2 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA14G37350.2 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os11g01340.2 (Oryza sativa), 5'ss of exon 7
TCGTGACTATGGTTGGATCAATAACATTCACCATGACATTGGCACCCATGTTATTCACCATCTTTTCCCTCAAATTCCTCATTATCACCTCGTTGAAGCGgta--tattttactattattactcacct-----aaaaagaatgcaatta--gtacatttgtttta---tctcttggaagttagtcattttcagttgcatgattgtaatgttc-----
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TCGGGACTACGGGTGGATCAACAACATCCACCATGACATTGGCACCCATGTCATCCACCACCTTTTCCCCCAAATTCCTCATTATCACCTCGTAGAAGCAgtaagtacaccgccagcattattcacctctgctagatagtatgtatgtacggtgcactgttaccaagttcactgagtaatgaaacaattgccttgttttgatgggaaaaaaaaacag
upper sequence: GLYMA14G37350.2 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os12g01370.1 (Oryza sativa), 5'ss of exon 7
TCGTGACTATGGTTGGATCAATAACATTCACCATGACATTGGCACCCATGTTATTCACCATCTTTTCCCTCAAATTCCTCATTATCACCTCGTTGAAGCGgta--tattttactattattactcacct-----aaaaagaatgcaatta--gtacatttgtttta---tctcttggaagttagtcattttcagttgcatgattgtaatgttc------
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TCGGGACTACGGGTGGATCAACAACATCCACCATGACATTGGCACCCATGTCATCCACCACCTTTTCCCCCAAATTCCTCATTATCACCTCGTAGAAGCAgtaagtacactgccagcattattcacctctgctagatagtatgtatgtacggtgcactgttaccaagttcactgagtactgaaacaattgccttgttttgatgggaacaaaaaaacag
upper sequence: GLYMA14G37350.2 (Glycine max), 5'ss of exon 7
lower sequence: Vv06s0004g06730.t01 (Vitis vinifera), 5'ss of exon 8
TCGTGACTATGGTTGGATCAATAACATTCACCATGACATTGGCACCCATGTTATTCACCATCTTTTCCCTCAAATTCCTCATTATCACCTCGTTGAAGCGgtata--ttttactattattactcacctaaaaagaatgcaattagtacatttgttttatctcttggaagttagtcattttc-agttgcatgattgtaatgttc----
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TCGTGACTATGGCTGGTTTAACAACATCCACCATGACATTGGCACCCATGTTATACATCATCTCTTCCCTCAAATCCCACACTATCACTTAATAGAAGCGgtacgacctccattgatgaaaataaccaatccccaattggaaaatcctgaggattaaactccatgttaagagcttactctctaactgtttgatattcctgcttgcag
upper sequence: GLYMA14G37350.2 (Glycine max), 5'ss of exon 7
lower sequence: Vv06s0004g06720.t01 (Vitis vinifera), 5'ss of exon 8
TCGTGACTATGGTTGGATCAATAACATTCACCATGACATTGGCACCCATGTTATTCACCATCTTTTCCCTCAAATTCCTCATTATCACCTCGTTGAAGCGgtatattttactattattactcacctaaaaagaatgcaattagtacatttgttttatctcttggaagttagtcattttcagttgcatgattgtaatgttc
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TCGTGACTATGGATGGTTTAATAGCATCCAACATAACACTGGCACGCATGTTATACACCATCTCTTCCCCCAAATCCCACACTATCACTTAATAGAAGCGgtaccaact-ccattaatgaaattcccagtggaaaacactcttaacttcaagagcttattctaactgtttgatgttcttgcctgcag-------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|10231665|gb|BE800553.1|BE800553EST: TTATTCACCATCTTTTCCCTCAAATTCCTCATTATCACCTCGTTGAAGCG ACACAAGCAGCAAAATCAGTTCTTGGAGAGTATTACCGTGAGCCAGAAAGA
genomic: TTATTCACCATCTTTTCCCTCAAATTCCTCATTATCACCTCGTTGAAGCGgtatatttta ... ttcactgcagACACAAGCAGCAAAATCAGTTCTTGGAGAGTATTACCGTGAGCCAGAAAGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCGTGACTATGGTTGGATCAATAACATTCACCATGACATTGGCACCCATGTTATTCACCATCTTTTCCCTCAAATTCCTCATTATCACCTCGTTGAAGCGgtatattttactattattactcacctaaaaagaatgcaattagtacatttgttttatctcttggaagttagtcattttcagttgcatgattgtaatgttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaagaa