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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATCGAATTGTGGGATGAGTGATGCAATCGGGCCAGTTAATATAAAAGAGCGACCAAGTTCTGAAATGCAGTCACGTATTGATGCAGAGgcaagttttatgaatttatatcctttataactgaaatatcatgtttcgattatttgcttcctcttctaagaattgttgtttttatcaaaaataaaagtcatacttctatatctattctgcag

Basic information

species Glycine max
transcript GLYMA14G29810.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G29810.1 (Glycine max), 5'ss of exon 7
lower sequence: AT5G53170.1 (Arabidopsis thaliana), 5'ss of exon 15
GTATCGAATTGTGGGATGAGTGATGCAATCGGGCCAGTTAATATAAAAGAGCGACCAAGTTCTGAAATGCAGTCACGTATTGATGCAGAGgcaagttttatgaatttatatcctttataactgaaatatcatgtttcgattatttgcttcctcttctaagaattgttgtttttatcaaaaataaaagtcatacttctatatctattctgcag
||||||| ||||||||||||||| ||||| || |||||| ||||||||||  ||||||| ||||| ||||| ||||| |||||||| |||| |     | |  ||| |  |  ||||   |    || |||  |  |  |  |       ||  ||    |  || || | ||   | |  || |                           
GTATCGAGTTGTGGGATGAGTGAGGCAATAGGACCAGTTCATATAAAAGAAAGACCAAGCTCTGATATGCAATCACGCATTGATGCCGAGgtagagactctctattcactttttttagttccctcat-tcaaatcccattggtcctaaatctaatcattcatctggtggtgttgatacatgtatag--------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51863760|gb|CV128241.1|CV128241
EST:     ATATNAAAGAGCGAGCAAGTTNNGAAATGCAGTCACGTATTGATGCAGAG                         GTTGTGAAACTCCTTCGAGAAGCATATGATCGTGTGAAAGCCCTTTTGAAA
genomic: ATATAAAAGAGCGACCAAGTTCTGAAATGCAGTCACGTATTGATGCAGAGgcaagtttta ... tattctgcagGTTGTGAAACTCCTTCGAGAAGCATATGATCGTGTGAAAGCCCTTTTGAAA