Sequence
atgc intronic sequence ATGC exonic sequenceAAAAGCTTAATTTCCCTCCTTGGATTTTGCTTTGAGGATGGCAATCTTCTTTTGGTTTATGATTTCTTATCAAGAGGAAGCCTTGAAGAGAATCTCCATGgtgcgctgcattattatatcacttttttttgtattcttcgtggccttgttaacttactaatttcttctttttatttcatatcaaaatag
Basic information
species | Glycine max |
transcript | GLYMA14G24660.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA14G24660.1 (Glycine max), 5'ss of exon 7
lower sequence: AT1G21590.1 (Arabidopsis thaliana), 5'ss of exon 5
AAAAGCTTAATTTCCCTCCTTGGATTTTGCTTTGAGGATGGCAATCTTCTTTTGGTTTATGATTTCTTATCAAGAGGAAGCCTTGAAGAGAATCTCCATGgtgcgctgcattattatatcacttttttttgtattcttcgtggccttgttaacttactaatttcttctttttatttcatatcaaaatag
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AAGAACGTTATTTCCCTTTTAGGTTATTGCTTTGAAAACAATAACCTGTTACTAGTATATAATTATCTCTCAAGAGGAAGCCTTGAAGAGAATCTTCACGgtaagcctc-tgaccatttagccacttgcagattttcttgtgttctggtt---ctaacaatcaagg-tttgagattgagattag-----
upper sequence: GLYMA14G24660.1 (Glycine max), 5'ss of exon 7
lower sequence: AT1G77280.1 (Arabidopsis thaliana), 5'ss of exon 6
AAAAGCTTAATTTCCCTCCTTGGATTTTGCTTTGAGGATGGCAATCTTCTTTTGGTTTATGATTTCTTATCAAGAGGAAGCCTTGAAGAGAATCTCCATGgtgcgctgca--ttattatatcacttttttttgtattcttcgtggccttgtta-acttactaatttctt---ctttttatttcatatcaaaatag
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AAGAATATTATCTCCCTCTTAGGATTTTGCTTTGAAGACCATAACCTTTTACTTGTATACAATTATCTCTCAAGAGGAAGCCTTGAAGAGAACCTTCATGgtactttttagacaagccctttgccttttaaagcaactcagggatacttattatgatcatggatctaacaaatgcttggtttcatacccag----
upper sequence: GLYMA14G24660.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv18s0001g01680.t01 (Vitis vinifera), 5'ss of exon 5
AAAAGCTTAATTTCCCTCCTTGGATTTTGCTTTGAGGATGGCAATCTTCTTTTGGTTTATGATTTCTTATCAAGAGGAAGCCTTGAAGAGAATCTCCATGgtgc----gctgcattattatatcacttttttttg-tattcttc--------------gtggccttgttaacttactaatttcttctttttatttcat-atcaaaatag
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AAGAACATCATTTCCCTTTTGGGCTTCTGTTTTGAGAACAATAATCTTCTCCTGGTTTATGATTTCTTATCAAGAGGAAGCCTGGAGGAGAACCTTTATGgtaccagagttacacaaaaacttttctttttttagatattaaattgaaattgaagacagttgtgttcttaattagcgatatgtttcttgttggttctttattgaatcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|7028593|gb|AW458376.1|AW458376EST: TTTGGTTTATTATTTCTTATCAAGAGGAAGCCTTGAAGAGAATCTCCATG GTAATAAGAAAAATCCACTTATGTTTGGTTGGACTGAGAGATATAAGGTGG
genomic: TTTGGTTTATGATTTCTTATCAAGAGGAAGCCTTGAAGAGAATCTCCATGgtgcgctgca ... atcaaaatagGTAATAAGAAAAATCCACTTATGTTTGGTTGGACTGAGAGATATAAGGTGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AAAAGCTTAATTTCCCTCCTTGGATTTTGCTTTGAGGATGGCAATCTTCTTTTGGTTTATGATTTCTTATCAAGAGGAAGCCTTGAAGAGAATCTCCATGgtgcgctgcattattatatcacttttttttgtattcttcgtggccttgttaacttactaatttcttctttttatttcatatcaaaatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA