Sequence
atgc intronic sequence ATGC exonic sequenceGATATCTATTGTTTGGATGCTGATGGTGCTCTTTTTGATGCTGCATTAATTTCTGCAGTTGCTGCCTTATCTCATTgtaagtaatgtcatattcactgtaatttattcatattatgcatctattagaccaaccccttattcagaataataaggcccacatttgaaaactgtacatg...
Basic information
species | Glycine max |
transcript | GLYMA14G22250.2 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA14G22250.2 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G123305_T01 (Zea mays), 5'ss of exon 5
GATATCTATTGTTTGGATGCTGATGGTGCTCTTTTTGATGCTGCATTAATTTCTGCAGTTGCTGCCTTATCTCATTgtaagtaatgtcatattcactgta-atttattcatattatgcatctattagaccaaccccttattcagaataataaggcccacatttgaaaactgtacatg---
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GATATCTATTGTTTGAATGCTGATGGGTCTCTGTTTGATGCTGCACTTATTTCAGCAGTGGCTGCCTTTACACATTgtacgttcctttat-ttcactgtacatatgaacatgatatcctcccactatccca---ttttgtgcaatatggaaatatacaatgttgctttatttccatcatg
upper sequence: GLYMA14G22250.2 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM5G886044_T02 (Zea mays), 5'ss of exon 4
GATATCTATTGTTTGGATGCTGATGGTGCTCTTTTTGATGCTGCATTAATTTCTGCAGTTGCTGCCTTATCTCATTgtaagtaatgtcatattcactgta-atttattcatattatgcatctattagaccaaccccttattcagaataataaggcccacatttgaaaactgtacatg---
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GATATCTATTGCTTGAATGCTGATGGGTCTCTGTTTGATGCTGCACTTATTTCAGCAGTGGCTGCCTTCACACATTgtaggttccttttctttcactgtacatatggtcatgctaccctcccgctatctca---ttttgtgcaatatggaaatatcactatcatacaatgctgc-tgttc
upper sequence: GLYMA14G22250.2 (Glycine max), 5'ss of exon 7
lower sequence: AT1G60080.1 (Arabidopsis thaliana), 5'ss of exon 7
GATATCTATTGTTTGGATGCTGATGGTGCTCTTTTTGATGCTGCATTAATTTCTGCAGTTGCTGCCTTATCTCATTgtaagtaatgtcatattcactgtaatttattcatattatgcatctattagaccaaccccttattcagaataataaggcccacatttgaaaactgtacatg----
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GACATATATTGCCTGGATGCTGATGGTGCTCTCTTTGATGCTGCTCTGCTTGCTGCTGTCGCAGCCTTCTCCAATCgtaagttcttctctgttctcatcctttagttggtttcacagctcctttagag-aacctttgaataaagctgatt---ctcaagtttatcaaatccatttcgaat
upper sequence: GLYMA14G22250.2 (Glycine max), 5'ss of exon 7
lower sequence: Vv08s0007g08550.t01 (Vitis vinifera), 5'ss of exon 7
GATATCTATTGTTTGGATGCTGATGGTGCTCTTTTTGATGCTGCATTAATTTCTGCAGTTGCTGCCTTATCTCATTgtaag--taatgtcatattcactgtaatttattcatattatgcatctattagaccaaccccttattcagaataataaggcc-cacatttgaaaactgtacatg
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GACATATACTGTTTGGATGCAGATGGTTCTCTGTTTGATGCTGCTTTACTTGCAGCAGTGGCTGCCTTCTCTCACTgtaagattcgcgctatttagattttcattgctctttttcatgggttttcccctctagggccaggcattaaatactaggcctacttactggaaacctgatc---Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|254332143|gb|GR845973.1|GR845973EST: TGCTCTTTTTGATGCTGCATTAATTTCTGCAGTTGCTGCCTTATCTCATT TGCAAATTCCTGCTGTTGCCATGAATGATGATGGCAAAATAGTACTCGTGT
genomic: TGCTCTTTTTGATGCTGCATTAATTTCTGCAGTTGCTGCCTTATCTCATTgtaagtaatg ... gcattgacagTGCAAATTCCTGCTGTTGCCATGAATGATGATGGCAAAATAGTACTCGTGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GATATCTATTGTTTGGATGCTGATGGTGCTCTTTTTGATGCTGCATTAATTTCTGCAGTTGCTGCCTTATCTCATTgtaagtaatgtcatattcactgtaatttattcatattatgcatctattagaccaaccccttattcagaataataaggcccacatttgaaaactgtacatg
- - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC