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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAATATTTTCAATGATGCTAGTGTCCCATGGTCTGAGTACCGATATTATGATCCCAAGACAGTTGGCTTGGATTTTGAGGGCATGATAGAAGATATAAAGgttagatcctggtctaaaatttagaaagtgaaatggtctatgaacagtgttgggttaactgttttgtctgaactagaaatcaatatgcaagaatgttcta...

Basic information

species Glycine max
transcript GLYMA14G13480.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G13480.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os02g55420.1 (Oryza sativa), 5'ss of exon 7
GAATATTTTCAATGATGCTAGTGTCCCATGGTCTGAGTACCGATATTATGATCCCAAGACAGTTGGCTTGGATTTTGAGGGCATGATAGAAGATATAAAGgtta-gatcctggtctaaaatttagaaagtgaaatggtctatga--acagtgttgggttaactgttttgtctgaactagaaatcaatatgcaagaatgttcta
||| |||||||||||||| |  || || ||||| |||||||| ||||| || |||||||| |||||||||||||||||||| |||||||  || ||| ||||   | |      || |  | ||   | |   |   ||| ||    |  | ||    |   ||     | |  |  | || |   |     | | ||     
GAACATTTTCAATGATGCAAAGGTACCTTGGTCAGAGTACCGTTATTACGACCCCAAGACTGTTGGCTTGGATTTTGAGGGAATGATAGCTGACATACAGgtcgtgttttctaactcatttatattcaatactactatctgtgttttctattttaaacttgatgagcattgtttagcataactttgtcgttcaaattggc---

upper sequence: GLYMA14G13480.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM5G836910_T01 (Zea mays), 5'ss of exon 7
GAATATTTTCAATGATGCTAGTGTCCCATGGTCTGAGTACCGATATTATGATCCCAAGACAGTTGGCTTGGATTTTGAGGGCATGATAGAAGATATAAAGgt--tagatcctggtctaaaatttagaaagtgaaatggtctatgaacagtgttgggttaactg-ttttgtctgaactagaaatcaatatgcaagaatgttcta
|||||| |||||||||||||| || || ||||| |||||||| |||||||| |||||||| ||||| |||||||||||||| |||||||  || ||  ||||  | |    |  ||     |      | ||  ||  |   |   ||   |    || |     |||||  |  || |  |  |||     |  |  ||   
GAATATCTTCAATGATGCTAGGGTACCTTGGTCAGAGTACCGGTATTATGACCCCAAGACTGTTGGGTTGGATTTTGAGGGAATGATAGCTGACATTGAGgtacttggatgttctcatttgtcccactattgctatttttgctaggcatcttccattttatgaactttgttgggtctggggagtaatgctttaatagatt---

upper sequence: GLYMA14G13480.1 (Glycine max), 5'ss of exon 7
lower sequence: AT4G31990.4 (Arabidopsis thaliana), 5'ss of exon 8
GAATATTTTCAATGATGCTAGTGTCCCATGGTCTGAGTACCGATATTATGATCCCAAGACAGTTGGCTTGGATTTTGAGGGCATGATAGAAGATATAAAGgttag---atcctggtctaaaatttagaaagtgaaatggtctatgaacagtgttgggttaactgttttgtctgaactagaaatcaatatgcaagaatgttcta
|||||| ||||||||||| |  || || ||||| || ||||| || |||||||| || ||| |||| |||||||||||||| ||||||| ||||||||||||| |    |||| |      || |   |  ||| || | || |  | |    |     ||| |  |    |  |   ||   |||  ||      ||||   
GAATATCTTCAATGATGCCAAAGTTCCGTGGTCCGAATACCGCTACTATGATCCAAAAACAATTGGTTTGGATTTTGAGGGAATGATAGCAGATATAAAGgtttgtttgtcctagaaggctatgttttagttgacattg-ctttatatatgcatcaacaaacaggatatcatttatgtgatgccaaagtgagtatttgttt--

upper sequence: GLYMA14G13480.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv04s0008g06040.t01 (Vitis vinifera), 5'ss of exon 9
GAATATTTTCAATGATGCTAGTGTCCCATGGTCTGAGTACCGATATTATGATCCCAAGACAGTTGGCTTGGATTTTGAGGGCATGATAGAAGATATAAAGgttagatcctggtctaaaatttagaaagtgaaatggtctatgaacagtgttgggttaactgttttgtctgaactagaa-atcaatatgcaagaatgttcta---
||||||||||||||||||||| || || |||||||| |||||||| ||||| || || |||||||||||||||||||| || ||||||   ||||||||||| ||      ||     |  |    | |    |  | | |      |       ||| | ||     ||||  |     |||||    |||  | |  |    
GAATATTTTCAATGATGCTAGAGTTCCCTGGTCTGAATACCGATACTATGACCCAAAAACAGTTGGCTTGGATTTTGATGGGATGATATCCGATATAAAGgtaagg----agtaactgacatcaccatttgttttttttgttttttttcaaataataaattttaaagttgaataattttgtcaatggttaagggtatcattaac

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192316561|gb|FK006796.1|FK006796
EST:     ATCCCAAGACAGTTGGCTTGGATTTTGAGGGCATGATAGAAGATATAAAG                         TCAGCTCCGGAAGGATCTTTTATCTTACTTCATGGATGTGCTCATAACCCT
genomic: ATCCCAAGACAGTTGGCTTGGATTTTGAGGGCATGATAGAAGATATAAAGgttagatcct ... attttttcagTCAGCTCCGGAAGGATCTTTTATCTTACTTCATGGATGTGCTCATAACCCT
EST: gi|192316560|gb|FK006795.1|FK006795
EST:     ATCCCAAGACAGTTGGCTTGGATTTTGAGGGCATGATAGAAGATATAAAG                         TCAGCTCCGGAAGGATCTTTTATCTTACTTCATGGATGTGCTCATAACCCT
genomic: ATCCCAAGACAGTTGGCTTGGATTTTGAGGGCATGATAGAAGATATAAAGgttagatcct ... attttttcagTCAGCTCCGGAAGGATCTTTTATCTTACTTCATGGATGTGCTCATAACCCT