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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGTTATGACATGGAAGAGAAAGCCGCAAGGGCTTATGATCTTGCGGCTCTCAAGTATTGGGGACCTTCAACGCACATAAACTTCTCGgtatgtttcaattctggtggcatttctggctcaaagtattgtacaactctttggagtcccattttctctcttgtatttggcag

Basic information

species Glycine max
transcript GLYMA14G10130.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G10130.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os03g56050.1 (Oryza sativa), 5'ss of exon 4
GTGGTTATGACATGGAAGAGAAAGCCGCAAGGGCTTATGATCTTGCGGCTCTCAAGTATTGGGGACCTTCAACGCACATAAACTTCTCGgt-----atgtttcaattctggtgg---catttctggctcaaagtattgtacaactctttggagtcccattttctctcttgtat-ttggcag--------------------------------------------------------------------------
|||| ||||||||||| ||||| || || ||||| ||||||||||| || |||||||| ||||| ||||| |||||||| |||||| ||||     |  |  ||| |||| |     ||||| | |||     |       |||  |    | |    |||    | | |  |  | ||                                                                            
GTGGGTATGACATGGAGGAGAAGGCTGCCAGGGCGTATGATCTTGCTGCGCTCAAGTACTGGGGCCCTTCCACGCACATCAACTTCCCGgtgattaaattaccaactctgattagttcatttgttgcttttcttgcaagcaaacagtacacattttagtttagattttagagtgctagctcaagggcactgtgaatgactgtagttatgatgttacggctatcattgacgtttgttttcaccattttctgggcag

upper sequence: GLYMA14G10130.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os07g03250.1 (Oryza sativa), 5'ss of exon 3
GTGGTTATGACATGGAAGAGAAAGCCGCAAGGGCTTATGATCTTGCGGCTCTCAAGTATTGGGGACCTTCAACGCACATAAACTTCTCGgtatgtt-tcaattctggtggcatttctggctc--aaagtattgtacaactctttggagtcccattttctctcttgtatttggcag---------------
|||| ||||||||||| |||||||| || || || ||||| || ||||| |||||||||||||| ||||| || ||||| |||||| |||||  |  |||||||   |   |||| ||  ||   ||||| |||  |    || |  |    |||   |    || ||      |               
GTGGGTATGACATGGAGGAGAAAGCGGCGAGAGCGTATGACCTGGCGGCGCTCAAGTATTGGGGCCCTTCCACACACATCAACTTCCCGgtaattaatcaattcaattaaaatttttgattctgtaagtactgttaattaattagttggttaattgaataatgtgcatgcatatgtatgtatgtatgcag

upper sequence: GLYMA14G10130.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv18s0001g08610.t01 (Vitis vinifera), 5'ss of exon 5
GTGGTTATGACATGGAAGAGAAAGCCGCAAGGGCTTATGATCTTGCGGCTCTCAAGTATTGGGGACCTTCAACGCACATAAACTTCTCGgtatgtttcaattctggtggcatttctggctcaaagtattgtacaactctttggagtcccattttctctcttgtatttggcag
| || ||||| |||||||||||||| ||||| ||||| ||||| ||||| ||||| || ||||||||||| || || || |||||| ||||||| |||||  ||||    || |||   || |    |     || |  ||  |   | ||| |    ||  |  | | |||
GGGGGTATGATATGGAAGAGAAAGCTGCAAGAGCTTACGATCTGGCGGCCCTCAAATACTGGGGACCTTCTACTCATATCAACTTCCCGgtatgattcaacactggattaatctctcaatccattggtgacttaaattcttaaaacgcaattcttctgctctt--tggacag

upper sequence: GLYMA14G10130.1 (Glycine max), 5'ss of exon 7
lower sequence: EFJ26861 (Selaginella moellendorffii), 5'ss of exon 4
GTGGTTATGACATGGAAGAGAAAGCCGCAAGGGCTTATGATCTTGCGGCTCTCAAGTATTGGGGACCTTCAACGCACATAAACTTCTCGgtatgtttcaattctggtggcatttctggctcaaagtattgtacaactctttggagtcccattttctctcttgtatttggcag
| ||||||||||  ||||||||||| ||  | || |||||||| ||||| |||||||||||||||||| | ||   ||| |||||  | ||| | |||  | ||  ||     | |   |||     |   |  ||  | || |  |  |  || |   | | ||  |    
GGGGTTATGACAAAGAAGAGAAAGCAGCGCGAGCGTATGATCTGGCGGCGCTCAAGTATTGGGGACCTACGACCACCATCAACTTTCCTgtaagattccttcctcttg-----tattattcatgaactcacaagaccgtgtgtaaact-acgttttggttggcatcag----

upper sequence: GLYMA14G10130.1 (Glycine max), 5'ss of exon 7
lower sequence: EFJ21317 (Selaginella moellendorffii), 5'ss of exon 4
GTGGTTATGACATGGAAGAGAAAGCCGCAAGGGCTTATGATCTTGCGGCTCTCAAGTATTGGGGACCTTCAACGCACATAAACTTCTCGgtatgtttcaattctggtggcatttctggctcaaagtattgtacaactctttggagtcccattttctctcttgtatttggcag
| |||||||||| |||||||||||| ||  | || |||||||| ||||| |||||||||||||||||| | ||   ||| |||||  | ||  | |||  | ||  ||     | |   |||     |   |  ||  | || |  |  |  || |   | | ||  |    
GGGGTTATGACAAGGAAGAGAAAGCAGCGCGAGCGTATGATCTGGCGGCGCTCAAGTATTGGGGACCTACGACCACCATCAACTTTCCTgtgagattccttcctcttg-----tattattcatgaactcacaagaccgtgtgtaaact-acgttttgattggcatcag----