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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGACTTGACTGATTCAACTGTCTTAAGGAACATGGGTATAGGTATAGGTCATTCTCTTCTTGCCTACAAAAGCACACTTCAAGGAATAGGGAAGCTTCAGgtatgcagtgcaacatgggattgttgcttttctcctactatgtgcatgattatctttcttttttttattggaaatatagcattattagatgatatatttt...

Basic information

species Glycine max
transcript GLYMA14G06780.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G06780.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv13s0019g03330.t01 (Vitis vinifera), 5'ss of exon 8
GGACTTGACTGATTCAACTGTCTTAAGGAACATGGGTATAGGTATAGGTCATTCTCTTCTTGCCTACAAAAGCACACTTCAAGGAATAGGGAAGCTTCAGgtatgcagtgcaac--atgggat-tgttgcttttctcctactatgtgcatgattatctttcttttttttattggaaatatagcattattagatgatatatttt
 ||||||||||||||||| ||  ||||||||||||||  |||  |||| |||||||||||||||||||||||  || | || || ||||  |||||||||||| ||| |  ||   ||  | |    ||||  |||| |      ||    ||||   |    | || |  |   |  |    || |  ||    | | |   
TGACTTGACTGATTCAACAGTTCTAAGGAACATGGGTGAAGGATTAGGACATTCTCTTCTTGCCTACAAAAGTTCATTACAGGGTATAGCAAAGCTTCAGgtaagcaatataattaatatgttacagtgctcctctcttggataatgtgcaattacagtgacctgttatccttacataaggaaatcaggagtaactgtgt---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207819748|gb|GD790452.1|GD790452
EST:     ATTCTCTTCTTGCCTACAAAAGCACACTTCAAGGAATAGGGAAGCTTCAG                         GTTAATGAAGCTCGCTTGAGTGAAGACTTGAACCAGTGCTGGGAGGTGCTT
genomic: ATTCTCTTCTTGCCTACAAAAGCACACTTCAAGGAATAGGGAAGCTTCAGgtatgcagtg ... tacaatttagGTTAATGAAGCTCGCTTGAGTGAAGACTTGAACCAGTGCTGGGAGGTGCTT
EST: gi|208280434|gb|GE080548.1|GE080548
EST:     ATTCTCTTCTTGCCTACAAAAGCACACTTCAAGGAATAGGGAAGCTTCAG                         GTTAATGAAGCTCGCTTGAGTGAAGACTTGAACCAGTGCTGGGAGGTGCTT
genomic: ATTCTCTTCTTGCCTACAAAAGCACACTTCAAGGAATAGGGAAGCTTCAGgtatgcagtg ... tacaatttagGTTAATGAAGCTCGCTTGAGTGAAGACTTGAACCAGTGCTGGGAGGTGCTT
EST: gi|208124750|gb|GD924196.1|GD924196
EST:     ATTCTCTTCTTGCCTACAAAAGCACACTTCAAGGAATAGGGAAGCTTCAG                         GTTAATGAAGCTCGCTTGAGTGAAGACT
genomic: ATTCTCTTCTTGCCTACAAAAGCACACTTCAAGGAATAGGGAAGCTTCAGgtatgcagtg ... tacaatttagGTTAATGAAGCTCGCTTGAGTGAAGACT
EST: gi|193359542|gb|FK324599.1|FK324599
EST:     ATTCTCTTCTTGCCTACAAAAGCACACTTCAAGGAATAGGGAAGCTTCAG                         GTTAATGAAGCTCGCTTGAGTGAAGACTTGAACCAGTGCTGGGAGGTGACT
genomic: ATTCTCTTCTTGCCTACAAAAGCACACTTCAAGGAATAGGGAAGCTTCAGgtatgcagtg ... tacaatttagGTTAATGAAGCTCGCTTGAGTGAAGACTTGAACCAGTGCTGGGAGGTG-CT
EST: gi|208240488|gb|GE040970.1|GE040970
EST:     ATTCTCTTCTTGCCTACAAAAGCACACTTCAAGGAATAGGGAAGCTTCAG                         GTTAATGAAGCTCGCTTGAGTGAAGACTTGAACCAGTGCTGGGAGGTGCTT
genomic: ATTCTCTTCTTGCCTACAAAAGCACACTTCAAGGAATAGGGAAGCTTCAGgtatgcagtg ... tacaatttagGTTAATGAAGCTCGCTTGAGTGAAGACTTGAACCAGTGCTGGGAGGTGCTT
EST: gi|207787324|gb|GD756721.1|GD756721
EST:     ATTCTCTTCTTGCCTACAAAAGCACACTTCAAGGAATAGGGAAGCTTCAG                         GTTAATGAAGCTCGCTTGAGTGAAGACTTGAACCAGTGCTGGGAGGTGCTT
genomic: ATTCTCTTCTTGCCTACAAAAGCACACTTCAAGGAATAGGGAAGCTTCAGgtatgcagtg ... tacaatttagGTTAATGAAGCTCGCTTGAGTGAAGACTTGAACCAGTGCTGGGAGGTGCTT
EST: gi|193513684|gb|FK466458.1|FK466458
EST:     ATTCTCTTCTTGCCTACAAAAGCACACTTCAAGGAATAGGGAAGCTTCAG                         GTTAATGAAGCTCGCTTGAGTGAAGACTT
genomic: ATTCTCTTCTTGCCTACAAAAGCACACTTCAAGGAATAGGGAAGCTTCAGgtatgcagtg ... tacaatttagGTTAATGAAGCTCGCTTGAGTGAAGACTT
EST: gi|193386958|gb|FK351255.1|FK351255
EST:     ATTCTCTTCTTGCCTACAAAAGCACACTTCAAGGAATAGGGAAGCTTCAG                         GTTAATGAAGCTCGCTTGAGTGAAGACTTGAACCAGTGCTGGGAGGTG
genomic: ATTCTCTTCTTGCCTACAAAAGCACACTTCAAGGAATAGGGAAGCTTCAGgtatgcagtg ... tacaatttagGTTAATGAAGCTCGCTTGAGTGAAGACTTGAACCAGTGCTGGGAGGTG
EST: gi|208089303|gb|GD888636.1|GD888636
EST:     TTCAAGGAATAGGGAAGCTTCAG                         GTTAATGAAGCTCGCTTGAGTGAAGACTTGAACCAGTGCTGGGAGGTGCTT
genomic: TTCAAGGAATAGGGAAGCTTCAGgtatgcagtg ... tacaatttagGTTAATGAAGCTCGCTTGAGTGAAGACTTGAACCAGTGCTGGGAGGTGCTT
EST: gi|13562572|gb|BG550792.1|BG550792
EST:     ATTCTCTTCTTGCCTACAAAAGCACACTTCAAGGAATAGGGAAGCTTCAG                         GTTAATGAAGCTCGCTTGAGTGAAGACTTGAACCAGTGCTGGGAGGTGCTT
genomic: ATTCTCTTCTTGCCTACAAAAGCACACTTCAAGGAATAGGGAAGCTTCAGgtatgcagtg ... tacaatttagGTTAATGAAGCTCGCTTGAGTGAAGACTTGAACCAGTGCTGGGAGGTGCTT
EST: gi|51335938|gb|CO979804.1|CO979804
EST:     ATTCTCTTCTTGCCTACAAAAGCACACTTCAAGGAATAGGGAAGCTTCAG                         GTTAATGAAGCTCGCTTGAGTGAAGACTTGAACCAGTGCTGGGAGGTGCTT
genomic: ATTCTCTTCTTGCCTACAAAAGCACACTTCAAGGAATAGGGAAGCTTCAGgtatgcagtg ... tacaatttagGTTAATGAAGCTCGCTTGAGTGAAGACTTGAACCAGTGCTGGGAGGTGCTT
EST: gi|209723708|gb|BW682787.1|BW682787
EST:     TTCAAGGAATAGGGAAGCTTCAG                         GTTAATGAAGCTCGCTTGAGTGAAGACTTGAACCAGTGCTGGGAGGTGCTT
genomic: TTCAAGGAATAGGGAAGCTTCAGgtatgcagtg ... tacaatttagGTTAATGAAGCTCGCTTGAGTGAAGACTTGAACCAGTGCTGGGAGGTGCTT
EST: gi|192331880|gb|FK026664.1|FK026664
EST:     CTTGCCTACAAAAGCACACTTCAAGGAATAGGGAAGCTTCAG                         GTTAATGAAGCTCGCTTGAGTGAAGACTTGAACCAGTGCTGGGAGATGCTT
genomic: CTTGCCTACAAAAGCACACTTCAAGGAATAGGGAAGCTTCAGgtatgcagtg ... tacaatttagGTTAATGAAGCTCGCTTGAGTGAAGACTTGAACCAGTGCTGGGAGGTGCTT
EST: gi|209703691|gb|BW670681.1|BW670681
EST:     ATTCTCTTCTTGCCTACAAAAGCACACTTCAAGGAATAGGGAAGCTTCAG                         GTTAATGAAGCTCGCTTGAGTGAAGACTTGAACCAGTGCTGGGAGGTGCTT
genomic: ATTCTCTTCTTGCCTACAAAAGCACACTTCAAGGAATAGGGAAGCTTCAGgtatgcagtg ... tacaatttagGTTAATGAAGCTCGCTTGAGTGAAGACTTGAACCAGTGCTGGGAGGTGCTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGACTTGACTGATTCAACTGTCTTAAGGAACATGGGTATAGGTATAGGTCATTCTCTTCTTGCCTACAAAAGCACACTTCAAGGAATAGGGAAGCTTCAGgtatgcagtgcaacatgggattgttgcttttctcctactatgtgcatgattatctttcttttttttattggaaatatagcattattagatgatatatttt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA