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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACAAAGGGTAATTGGAGAGCCTATTGCCTCTGGGTTAGCCCTTGATGAATCTTGGCTTTGGCATCCTGACTTTGAGATTGCAGCAAAgcaagtgccttcacttgtttcaatgtttttatttattttttatttttttattgttgttcttttattgccttaaattttaagaacatataagccttattcattctcatgtttcag

Basic information

species Glycine max
transcript GLYMA14G04030.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G04030.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv06s0009g02790.t01 (Vitis vinifera), 5'ss of exon 7
GACAAAGGGTAATTGGAGAGCCTATTGCCTCTGGGTTAGCCCTTGATGAATCTTGGCTTTGGCATCCTGACTTTGAGATTGCAGCAAAgcaagtgccttcacttgtttcaatgtttttatttattttttatttttttattgttgttcttttattgccttaaattttaagaacatataagccttattcattctcatgtttcag
|||| ||||| |||||||||||  | |  |||||||||| ||||||||| ||| |||| ||| ||||||||||    |  |||||||||||||  |    |||  || ||    |||| ||  | | ||   ||| |||     || ||| |      | ||  ||| || |                || |||||||||||
GACAGAGGGTTATTGGAGAGCCAGTAGTTTCTGGGTTAGTCCTTGATGATTCTGGGCTCTGGGATCCTGACTTCATCAACGCAGCAAAgcaagatctcatactccttcca----ttttcttcttctcttcactttctatcac-attttttaacctttgtcaacattatgatc----------------ttttcatgtttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|12773716|gb|BG238643.1|BG238643
EST:     GCCCTTGATGAATCTTGGCTTTGGCATCCTGACTTTGAGATTGCA-CAAA                         GTATGTCATGAGCCCCCCTATTAGGAAACGAGGACATGATAAGGCCCTTCA
genomic: GCCCTTGATGAATCTTGGCTTTGGCATCCTGACTTTGAGATTGCAGCAAAgcaagtgcct ... catgtttcagGTATGTCATGAGCCCCCCTATTAGGAAACGAGGACATGATAAGGCCCTTCA
EST: gi|8826144|gb|BE209804.1|BE209804
EST:     GCCCTTGATGAATCTTGGCTTTGGCATCCTGACTTTGAGATTGCAGCAAA                         GTATGTCATGAGCCCCCCTATTAGGAAACGAGGACATGATAAGGCCCTTCA
genomic: GCCCTTGATGAATCTTGGCTTTGGCATCCTGACTTTGAGATTGCAGCAAAgcaagtgcct ... catgtttcagGTATGTCATGAGCCCCCCTATTAGGAAACGAGGACATGATAAGGCCCTTCA