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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTCTTGACACCTTCAACACAGCAATTGTATCTCCTATATACTATGTCATGTTCACAACACTTACAATACTAGCCAGTGTAATAATGTTTAAGgtataatcaactagttttggcatttaatgctaaatgcataagatgtttctgttgtctacgaattgtacaagaacctatttacatttaaaaataatgcttacag

Basic information

species Glycine max
transcript GLYMA14G03790.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G03790.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os05g43790.2 (Oryza sativa), 5'ss of exon 7
GCTCTTGACACCTTCAACACAGCAATTGTATCTCCTATATACTATGTCATGTTCACAACACTTACAATACTAGCCAGTGTAATAATGTTTAAGgtataatcaactagttttggcatttaatgctaaatgcataagatgtttctgttgtctacgaattgtacaag-aacctatttacatttaaaaat--aatgcttacag--
|| ||||| || || || || |||||||||||||| || || ||||| |||||||||||||| |||||||| || || || |||||||| ||||||  || |  |  |||||     |  | ||  |  |||       |  | | ||  | || ||| |     ||  ||||| |    | |||   |||          
GCACTTGATACATTTAATACTGCAATTGTATCTCCAATCTATTATGTAATGTTCACAACACTAACAATACTTGCAAGCGTCATAATGTTCAAGgtaatataagttc-ttttgtttccttgtactgcagccat-------tcatttggtagatgatttgaatgcccaagttattttctgaaagaaactgaatatccttgatt

upper sequence: GLYMA14G03790.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G120175_T04 (Zea mays), 5'ss of exon 7
GCTCTTGACACCTTCAACACAGCAATTGTATCTCCTATATACTATGTCATGTTCACAACACTTACAATACTAGCCAGTGTAATAATGTTTAAGgtataatcaact--agttttggc------atttaatgctaaatgcataagatgtttctgttgtctacgaattgtacaagaacctatttacatttaaaaataatgcttacag------------------------------------------------------------------------------
|| |||||||| |||||||| |||||||||||||| ||||| ||||| ||||||||||| ||||||||||| ||||| || |||||||| |||||| | |    |     ||||||      ||||| |||| | | |||       ||   |     | | |   |       | |    | ||||  | ||  |  |    |                                                                              
GCACTTGACACGTTCAACACGGCAATTGTATCTCCAATATATTATGTAATGTTCACAACTCTTACAATACTTGCCAGCGTCATAATGTTCAAGgtaaattttgttttgcctttggcttatatatttattgcttatttcattctgcaatttactccctcatgcaccttttggaccctttcagatattttcatattgttgtatttgtttcatatgcattcctcagctctagtattatttgacaaaaccgtaaactgatgccatgctgtttaaatgtttgtgtag

upper sequence: GLYMA14G03790.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G120175_T01 (Zea mays), 5'ss of exon 1
-------GCTCTTGACACCTTCAACACAGCAATTGTATCTCCTATATACTATGTCATGTTCACAACACTTACAATACTAGCCAGTGTAATAATGTTTAAGgtataatcaact--agttttggc------atttaatgctaaatgcataagatgtttctgttgtctacgaattgtacaagaacctatttacatttaaaaataatgcttacag------------------------------------------------------------------------------
       || |||||||| |||||||| |||||||||||||| ||||| ||||| ||||||||||| ||||||||||| ||||| || |||||||| |||||| | |    |     ||||||      ||||| |||| | | |||       ||   |     | | |   |       | |    | ||||  | ||  |  |    |                                                                              
GCTGTAGGCACTTGACACGTTCAACACGGCAATTGTATCTCCAATATATTATGTAATGTTCACAACTCTTACAATACTTGCCAGCGTCATAATGTTCAAGgtaaattttgttttgcctttggcttatatatttattgcttatttcattctgcaatttactccctcatgcaccttttggaccctttcagatattttcatattgttgtatttgtttcatatgcattcctcagctctagtattatttgacaaaaccgtaaactgatgccatgctgtttaaatgtttgtgtag

upper sequence: GLYMA14G03790.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv06s0009g03650.t01 (Vitis vinifera), 5'ss of exon 7
GCTCTTGACACCTTCAACACAGCAATTGTATCTCCTATATACTATGTCATGTTCACAACACTTACAATACTAGCCAGTGTAATAATGTTTAAGgtataatcaactagttt--tggcatttaatgctaaatgcataagatgtttctgttg-tctacgaattgtacaagaacctatttacatttaaaaataatgcttacag
|||||||| || |||||||| ||| |||| || || ||||| ||||||||||||||| |||||||||| || || ||||| |||||||| |||||||  ||  ||   |   |||||| | |||||  ||||      ||||||       |||  | || |     ||  ||  | |||||  |  |     |||   
GCTCTTGATACTTTCAACACTGCAGTTGTGTCCCCCATATATTATGTCATGTTCACATCACTTACAATCCTTGCTAGTGTGATAATGTTCAAGgtattgtcttctttatcagtggcatcttatgctggatgc------tgtttcctccaacctataactttttagcaaatatagcttcatttttaggtttgctttatta

upper sequence: GLYMA14G03790.1 (Glycine max), 5'ss of exon 7
lower sequence: PP1S49_181V6.2 (Physcomitrella patens), 5'ss of exon 7
GCTCTTGACACCTTCAACACAGCAATTGTATCTCCTATATACTATGTCATGTTCACAACACTTACAATACTAGCCAGTGTAATAATGTTTAAGgtataatcaactagttttggcatttaatgctaaatgcataagatgtttctgttgtctacgaattgtacaagaacctatttacatttaaaaataatgcttacag-
|| || ||||| || ||||| |||||||| ||||||||||| || |||||||||||| || | || || || || ||||  || ||||| ||||| |   |      |  | ||| |   | | |    || |   |    |     | |  |  || |  ||| |    | |      |  | | || | ||||  
GCCCTGGACACATTTAACACGGCAATTGTTTCTCCTATATATTACGTCATGTTCACATCATTGACCATCCTGGCGAGTGCTATCATGTTCAAGgtttgtgctgacgctactagcaatcc-taccattgtcaaagtttagagcaacaatatctgt-ttttctaagta--ggtctgtgaagatgattgatccgtacacc