Sequence
atgc intronic sequence ATGC exonic sequenceGGAAGGGCTTTCCCACAAGGTGCTACAGTGGTATTTATGCAGAATGGAAGGTTGGTTTGCTACAGATGCTGATACCATATCACTGAAATGTTGGGATCAGgtaatttgacaaaaccaagtttgagatgtttgggttctattatctatatatccatttcaagtttatgtcattgaaacttgaattgcatgacaaatcattg...
Basic information
species | Glycine max |
transcript | GLYMA14G03610.2 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA14G03610.2 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os04g53190.1 (Oryza sativa), 5'ss of exon 8
GGAAGGGCTTTCCCACAAGGTGCTACAGTGGTATTTATGCAGAATGGAAGGTTGGTTTGCTACAGATGCTGATACCATATCACTGAAATGTTGGGATCAGgtaa---tttga---caaaaccaagtttgagatgtttgggttctattatctatatatccatttcaagtttat-gtcat---tgaaacttgaattgcatgacaaat-cattg
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AGAAGGGATTGCTCATGATGTTCTTCAGTGGTATTTGTGCCGCATGGAAGGTTGGTTTGCTACTGATGCGGACGCAATCTCTCTTCAGGGTTGGGACCAGgtaggactttggttcctgatatcagctacaattgccaatattttgctcatgatgtactcatgctagtttgattgctatgtctcatgttcgtactgtgctgtgggtgcag--
upper sequence: GLYMA14G03610.2 (Glycine max), 5'ss of exon 7
lower sequence: Vv12s0028g01120.t01 (Vitis vinifera), 5'ss of exon 7
GGAAGGGCTTTCCCACAAGGTGCTACAGTGGTATTTATGCAGAATGGAAGGTTGGTTTGCTACAGATGCTGATACCATATCACTGAAATGTTGGGATCAGgtaatttgacaaaaccaagtttgagatgtttgggttctattatctatatatccattt---caag--tttatgtcattgaaacttgaattgcatgacaaatcattg
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GGAGGGGCTGGCTCATAAGGTACTGCAATGGTACTTGTGCAGAATGGAAGGCTGGTTTGCTGCAGATGCTGATAACATATCACTTAAAAGTTGGGATCAGgtatcaattcataaatagttctagatctcttagccaatagaaatagaaaaaagagttgttcaagaatcaatgtgcgtgtatgctaaacatgataaggaga-----Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|10848363|gb|BF070866.1|BF070866EST: GTTGGTTTGCTACAGATGCTGATACCATATCACTGAAATGTTGGGATCAG GAAGTATTGCTCCCTGGTGGTCACGGTCTTATGGTCAGGGGTTACCAGCCT
genomic: GTTGGTTTGCTACAGATGCTGATACCATATCACTGAAATGTTGGGATCAGgtaatttgac ... ctgcatacagGAAGTATTGCTCCCTGGTGGTCACGGTCTTATGGTCAGGGGTTACCAGCCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGAAGGGCTTTCCCACAAGGTGCTACAGTGGTATTTATGCAGAATGGAAGGTTGGTTTGCTACAGATGCTGATACCATATCACTGAAATGTTGGGATCAGgtaatttgacaaaaccaagtttgagatgtttgggttctattatctatatatccatttcaagtttatgtcattgaaacttgaattgcatgacaaatcattg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT