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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGCCAGAATACTTTTGTTCGTTTACATGTTTTACCATGTCTACCTGCACTTTGACCAGgtaataactactgactgaatttaagaattgtctggtatgtggtgctttgcagcaagcagatcttaatattgaatttttggccttttaagatggctaataa...

Basic information

species Glycine max
transcript GLYMA14G03520.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G03520.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv12s0028g01000.t01 (Vitis vinifera), 5'ss of exon 7
GTTGCCAGAATACTTTTGTTCGTTTACATGTTTTACCATGTCTACCTGCACTTTGACCAGgtaataac---tactgactg-aatttaagaattgtctggtatgtggtgctttgcagcaagcagatcttaatattgaatttttggccttttaagatggctaataa
||||||||||||||  | ||| | ||| ||||||||||| ||||| |||||| ||| |||||||||||    |||  ||  ||    || |     ||     |||  |  |        ||   | ||  |   | |   ||        |||     |  | 
GTTGCCAGAATACTCCTTTTCATATACCTGTTTTACCATATCTACTTGCACTATGATCAGgtaataacactcactacctacaaacctaggaggaattgtcccatggaaccct----tgtacactgcatagcagaaagtgcctgcatacaatagaaaagcagcac
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|214004858|gb|DB988867.1|DB988867
EST:     CTACCTGCACTTTGACCAG                         ATTGAGCAGATGCACGCGTTTGGACAAGTGTTAGTTATTGTTGTGCCACTG
genomic: CTACCTGCACTTTGACCAGgtaataacta ... cattcaacagATTGAGCAGATGCACGCGTTTGGACAAGTGTTAGTTATTGTTGTGCCACTG
EST: gi|308098376|gb|HO760117.1|HO760117
EST:     TACTTTTGTTCGTTTACATGTTTTACCATGTCTACCTGCACTTTGACCAG                         ATTGAGCAGATGCACGCGTTTGGACAAGTGTTAGTTATTGTTGTGCCACTG
genomic: TACTTTTGTTCGTTTACATGTTTTACCATGTCTACCTGCACTTTGACCAGgtaataacta ... cattcaacagATTGAGCAGATGCACGCGTTTGGACAAGTGTTAGTTATTGTTGTGCCACTG