1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
TATAATTGGAATTCAACAAGGTGAATCAAAGTCTTTTCCTCTTGTATTTCCTGAAACATGGAACCAAGAAAATCTTCGAGGTGTTCATGCTCAGTTTACTgtaagtttctaatgctgaatcaaagaagtttaattgttttagggacatgaactgacatgatagtttttttcttttggtcctttggataccaaattcttca...
species | Glycine max |
transcript | GLYMA14G02220.2 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CTGAAACATGGAACCAAGAAAATCTTCGAGGTGTTCATGCTCAGTTTACT GTTGAATGCAAAGAACTTTTTTACAGAGATTTACCTGAGCTGGATGATTCTEST: gi|9898860|gb|BE607828.1|BE607828
genomic: CTGAAACATGGAACCAAGAAAATCTTCGAGGTGTTCATGCTCAGTTTACTgtaagtttct ... tgcataacagGTTGAATGCAAAGAACTTTTTTACAGAGATTTACCTGAGCTGGATGATTCT
EST: CTGAAACATGGAACCAAGAAAATCTTCGAGGTGTTCATGCTCAGTTTACT GTTGAATGCAAAGAACTTTTTTACAGAGATTTACCTGAGCTGGATGATTCTEST: gi|151410964|gb|EV280779.1|EV280779
genomic: CTGAAACATGGAACCAAGAAAATCTTCGAGGTGTTCATGCTCAGTTTACTgtaagtttct ... tgcataacagGTTGAATGCAAAGAACTTTTTTACAGAGATTTACCTGAGCTGGATGATTCT
EST: CTGAAACATGGAACCAAGAAAATCTTCGAGGTGTTCATGCTCAGTTTACT GTTGAATGCAAAGAACTTTTTTACAGAGATTTACCTGAGCTGGATGATTCT
genomic: CTGAAACATGGAACCAAGAAAATCTTCGAGGTGTTCATGCTCAGTTTACTgtaagtttct ... tgcataacagGTTGAATGCAAAGAACTTTTTTACAGAGATTTACCTGAGCTGGATGATTCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TATAATTGGAATTCAACAAGGTGAATCAAAGTCTTTTCCTCTTGTATTTCCTGAAACATGGAACCAAGAAAATCTTCGAGGTGTTCATGCTCAGTTTACTgtaagtttctaatgctgaatcaaagaagtttaattgttttagggacatgaactgacatgatagtttttttcttttggtcctttggataccaaattcttca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA