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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACTTTGGATGCTCATCAGAAAGGAGTGAATTGTGTTGATTATTTTACAGGTGGTGACAAACCATATCTAATCACTGGTTCTGATGATCACACTGCTAAGgttttgttttcatttgttgcttgatctatctgcttgtacgcatttacatatacatacatatatatatatatgaaaaggaataacatggatgaaacttatgaatcag

Basic information

species Glycine max
transcript GLYMA13G43680.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G43680.2 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os06g05180.2 (Oryza sativa), 5'ss of exon 7
TACTTTGGATGCTCATCAGAAAGGAGTGAATTGTGTTGATTATTTTACAGGTGGTGACAAACCATATCTAATCACTGGTTCTGATGATCACACTGCTAAGgttttgttttcatttgttgcttgatctatctgcttgtacgcattt-acatatacatacatatatatatatatgaaaaggaataacatggatgaaacttatgaatcag
 ||  | ||||  ||||| || || ||||| |||||||| || || || ||||||||||  || ||| | |||||||||||||||||   |||||| |||||||| ||||              ||||||  ||| |  |  ||  |  ||| ||    | | |  |    | | | ||  |      | |||| |           
CACACTCGATGGACATCAAAAGGGTGTGAACTGTGTTGACTACTTCACTGGTGGTGACAGGCCCTATTTGATCACTGGTTCTGATGACTCCACTGCAAAGgttttttttt--------------tctatccacttttgagtgttccaagtatccacgattctgtgcagtcctaagatggtgtggtcatggtgaaccag---------

upper sequence: GLYMA13G43680.2 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G141587_T01 (Zea mays), 5'ss of exon 7
TACTTTGGATGCTCATCAGAAAGGAGTGAATTGTGTTGATTATTTTACAGGTGGTGACAAACCATATCTAATCACTGGTTCTGATGATCACACTGCTAAGgttttgttttcatttgttgc-ttgatctatctgcttgtacgcatttacatatacatacatatatatatatatgaaaaggaataacatggatgaaacttatgaatcag
 ||  | ||||  |||  |||||| ||||| ||||||||||| || || |||||||||  ||||||  |||| ||||| ||||||||||| ||||| |||||||     |||| || |||  |||  | |   | |||   |||  |   |  |    ||     |||   | |||                               
CACACTAGATGGCCATTCGAAAGGTGTGAACTGTGTTGATTACTTCACTGGTGGTGACCGACCATACTTAATTACTGGCTCTGATGATCAGACTGCAAAGgtttg----tcatatgatgcactgaattgtactcctgtggtcatgcatgcactctgtgatgacattattggtcaaatcag---------------------------

upper sequence: GLYMA13G43680.2 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G124886_T04 (Zea mays), 5'ss of exon 7
TACTTTGGATGCTCATCAGAAAGGAGTGAATTGTGTTGATTATTTTACAGGTGGTGACAAACCATATCTAATCACTGGTTCTGATGATCACACTGCTAAGgttttgttttcatttgttgcttgatctatctgcttgtacgcatttacata-tacatacatatatatatatatgaaaaggaataacatggatgaaacttatgaatcag
 ||  | ||||  |||   ||||| ||||| ||||||||||| || || ||||||||   |||||| ||||| ||||| ||||||||||| ||||| |||||||     ||||  |     |||  | |   | |||   ||| |   || |   ||||   ||     |||  |    |  |                        
CACACTAGATGGCCATTCCAAAGGTGTGAACTGTGTTGATTACTTCACTGGTGGTGATCGACCATACCTAATTACTGGCTCTGATGATCAGACTGCAAAGgtttg----tcataagca--ctgaattgtactcctgtgatcatgtctgtactctgtacactgatgacattattgatcaaatcag-----------------------

upper sequence: GLYMA13G43680.2 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G443953_T01 (Zea mays), 5'ss of exon 8
TACTTTGGATGCTCATCAGAAAGGAGTGAATTGTGTTGATTATTTTACAGGTGGTGACAAACCATATCTAATCACTGGTTCTGATGATCACACTGCTAAGgttt--tgttttcatttgttgcttgatctatctgcttgtacgcatttacatatacatacatatatatatatatgaaaaggaataacatggatgaaacttatgaatcag
 || ||||||| ||||   ||||| || |||||||||||||| || || |||||||||   ||||||||||| || || |||||||| || ||||| ||||| |    | ||||||||    |      || |   || ||    | ||  ||   |  |  |  ||                                         
CACATTGGATGGTCATTCAAAAGGTGTCAATTGTGTTGATTACTTCACTGGTGGTGACCGGCCATATCTAATTACAGGCTCTGATGACCAAACTGCAAAGgtatgacatgttcatttgcacatatgagcattt---tggacattatgactgattggttaacttgaattag--------------------------------------

upper sequence: GLYMA13G43680.2 (Glycine max), 5'ss of exon 7
lower sequence: AT1G52360.1 (Arabidopsis thaliana), 5'ss of exon 7
TACTTTGGATGCTCATCAGAAAGGAGTGAATTGTGTTGATTATTTTACAGGTGGTGACAAACCATATCTAATCACTGGTTCTGATGATCACACTGCTAAGgttttgttttcatttgttgcttgatctatctgcttgtacgcatttacatatacatacatatatatatatatgaaaaggaataacatggatgaaacttatgaatcag
||| |||||||| |||||||||||||| |||||||| |||||||| || |||||||| || || ||| |||| || || ||||||||||||||||||||||| | |  | |   ||||   || ||| |  | |  |||   | ||| |  ||||       ||| |   |  |    | | || | | ||||  |  ||||||||
TACATTGGATGCCCATCAGAAAGGAGTAAATTGTGTAGATTATTTCACCGGTGGTGATAAGCCCTATTTAATTACCGGCTCTGATGATCACACTGCTAAGgtat-gcctcc---tgttcaatggtcttttagttgatacatttctac-tggacat-------tatgtgctttcaggttatttac-tagttgaatttcgtgaatcag

upper sequence: GLYMA13G43680.2 (Glycine max), 5'ss of exon 7
lower sequence: AT1G79990.1 (Arabidopsis thaliana), 5'ss of exon 11
TACTTTGGATGCTCATCAGAAAGGAGTGAATTGTGTTGATTATTTTACAGGTGGTGACAAACCATATCTAATCACTGGTTCTGATGATCACACTGCTAAGgttt--------tgttttcattt--------gttgcttg----atctatctgcttgtacgcatttacatatacat-acatatatatatatatgaaaaggaataaca---tggatgaaacttatgaatcag------------
|||||||||||| ||||  ||||| || || ||||| || || ||||| ||||| || |||||||| ||||||||||||||||||||||| ||||||||||| |          || |   ||        |||| |||    || | | |||||||| | || | ||| |  ||    | ||||||  |  |   |||  |  |    || ||     | || |||               
TACTTTGGATGCACATCTCAAAGGGGTAAACTGTGTAGACTACTTTACTGGTGGGGATAAACCATACCTAATCACTGGTTCTGATGATCATACTGCTAAGgtctgtactgagctttcttgcttctttgcaagttgtttgctacatatgtgtgcttgtatgtatctccatttgtattgtttgtatataggttcgtgcagggttttctgtttgtatattgttcataaatttcttctggaagcag

upper sequence: GLYMA13G43680.2 (Glycine max), 5'ss of exon 7
lower sequence: AT3G15980.3 (Arabidopsis thaliana), 5'ss of exon 7
TACTTTGGATGCTCATCAGAAAGGAGTGAATTGTGTTGATTATTTTACAGGTGGTGACAAACCATATCTAATCACTGGTTCTGATGATCACACTGCTAAGgttttgttttcatttgttgcttgatctatctgcttgtacgcatttacatatacatacatatatatatatatgaaaaggaataacatggatgaaacttatgaatcag
|||  |||||||||||||||||||||| || ||||| |||||||| ||||| ||||| ||||| |||||||| || || ||||||||||| ||||||||||| |  || |  ||         || | | |||||  |  |   |    ||  ||  || |  | ||   | |  ||   ||   |    |               
TACACTGGATGCTCATCAGAAAGGAGTCAACTGTGTAGATTATTTCACAGGGGGTGATAAACCCTATCTAATTACCGGCTCTGATGATCATACTGCTAAGgtatgcttctggttaagcttccaatatctgtgctttgattcccctgagaat-tatgtatttgcagatcgtttactagtggtactttttcag---------------

upper sequence: GLYMA13G43680.2 (Glycine max), 5'ss of exon 7
lower sequence: Vv11s0016g04180.t01 (Vitis vinifera), 5'ss of exon 7
TACTTTGGATGCTCATCAGAAAGGAGTGAATTGTGTTGATTATTTTACAGGTGGTGACAAACCATATCTAATCACTGGTTCTGATGATCACACTGCTAAGgttttgttttcatttgttgcttgatctatctgcttgtacgcatttacatatacatacatatatatatatatgaaaaggaataacatggatgaaacttatgaatcag
|||||||||||  ||   |||||| || || ||||||||||| || || ||||||||||| |||||  ||||||| |||||||||||||| ||||| ||||| ||  | | ||  | |  ||||   |   ||||  |   || | ||| | |||     ||  | | | |||  |     ||  | | || |||           
TACTTTGGATGACCACATGAAAGGGGTAAACTGTGTTGATTACTTCACTGGTGGTGACAAGCCATACTTAATCACGGGTTCTGATGATCAAACTGCCAAGgtgtttatctgat--gcttattgactaaatagcttccatttatgtgcat-tccatttgattac-tttctgtgatta-----aattttggtggaacag---------

upper sequence: GLYMA13G43680.2 (Glycine max), 5'ss of exon 7
lower sequence: Vv09s0002g04810.t01 (Vitis vinifera), 5'ss of exon 7
TACTTTGGATGCTCATCAGAAAGGAGTGAATTGTGTTGATTATTTTACAGGTGGTGACAAACCATATCTAATCACTGGTTCTGATGATCACACTGCTAAGgttttgttttcatttgttgcttgatctatctgcttgtacgcatttacatatacatacatatatatatatatgaaaaggaataacatggatgaaacttatgaatcag
|||  ||||||| ||||||||||| || |||||||||||||| |||||||| ||||| ||||||||||||||||| |||||||||||||| ||||||||||| | |   |   |  ||  ||  || | |||  | || | |||||         | | |   | || |      |  |||       ||| |             
TACACTGGATGCCCATCAGAAAGGGGTAAATTGTGTTGATTACTTTACAGGCGGTGATAAACCATATCTAATCACGGGTTCTGATGATCATACTGCTAAGgtct-gccgttgataattattt--tcaagctgtgttta-gtatttatgcggtttgatagaaggaaatgttcatggacaaatcctccaaatgcag------------

upper sequence: GLYMA13G43680.2 (Glycine max), 5'ss of exon 7
lower sequence: PP1S61_1V6.1 (Physcomitrella patens), 5'ss of exon 7
TACTTTGGATGCTCATCAGAAAGGAGTGAATTGTGTTGATTATTTTACAGGTGGTGACAAACCATATCTAATCACTGGTTCTGATGATCACACTGCTAAGgttttgttttcat-ttgttgcttgatctatctgcttgtacgcatttacatatacatacatatatatatatatgaaa-----aggaataacatggatgaaacttatgaatcag----------------------------------------------------------------------------------
 ||| | || |||||||||||||||||||||||||| || || ||||  ||||||||   ||| ||||| || |||||||| |||||||| ||||| |||||  ||  || || ||||   ||| |     |  || | |   |  | ||| ||  | | |  |   | ||| |        ||| |  ||||  |   | || |||   ||                                                                                  
CACTCTAGAGGCTCATCAGAAAGGAGTGAATTGTGTCGAATACTTTAGTGGTGGTGATCGACCTTATCTCATAACTGGTTCAGATGATCAAACTGCCAAGgtaatgactttatcttgtctgttgctaatcttaattctccaggtcaatata-actgaaagacttggttctataaggctttcgggatttgcatgagtatcatttttgacatagcatgacttactgtaatccatgttcgattaaatgtattctgatgtgtagttcagtaacttacaattttttccttgtcgggcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9987279|gb|BE661387.1|BE661387
EST:     GTGGTGACAAACCATATCTAATCACTGGTTCTGATGATCACACTGCTAAG                         GTATGGGATTATCAGACCAAAAGTTGTGTCCAGACCCTAGAAGGTCACACA
genomic: GTGGTGACAAACCATATCTAATCACTGGTTCTGATGATCACACTGCTAAGgttttgtttt ... tatgaatcagGTATGGGATTATCAGACCAAAAGTTGTGTCCAGACCCTAGAAGGTCACACA