1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
AGCTTATAGAAGATTGTGCTGGAGTCAAGGGTGACGACTCAGAAATTGTCCTTGACCTGTTTTGTGGAACAGGCACCATAGGTCTGACGCTTGCAAGAAGgtaatctttgatctccatctggttttagtattttaggataaactgtgaagcaatgagattaatttcttgtcttccaattctgaacag
species | Glycine max |
transcript | GLYMA13G42890.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CTTGACCTGTTTTGTGGAACAG-CACCATAG-TCTGACGCTTGCAAGAAG TGTTAG-CATGTTTATGGCTTATGAAGTAGTTCCTCAA-CCATCACAGATGEST: gi|10234615|gb|BE803503.1|BE803503
genomic: CTTGACCTGTTTTGTGGAACAGGCACCATAGGTCTGACGCTTGCAAGAAGgtaatctttg ... ttctgaacagTGTTAGGCATGTTTATGGCT-ATGAAGTAGTTCCTCAAGCCATCACAGATG
EST: CTTGACCTGTTTTGTGGAACAGGCACCATAGGTCTGACGCTTGCAAGAAG TGTTAGGCATGTTTATGGCTATGAAGTAGTTCCTCAAGCCATCACAGATGCEST: gi|18040955|gb|BM309249.1|BM309249
genomic: CTTGACCTGTTTTGTGGAACAGGCACCATAGGTCTGACGCTTGCAAGAAGgtaatctttg ... ttctgaacagTGTTAGGCATGTTTATGGCTATGAAGTAGTTCCTCAAGCCATCACAGATGC
EST: CTTGACCTGTTTTGTGGAACAGGCACCATAGGTCTGACGCTTGCAAGAAG TGTTAGGCATGTTTATGGCTATGAAGTAGTTCCTCAAGCCATCACAGATGC
genomic: CTTGACCTGTTTTGTGGAACAGGCACCATAGGTCTGACGCTTGCAAGAAGgtaatctttg ... ttctgaacagTGTTAGGCATGTTTATGGCTATGAAGTAGTTCCTCAAGCCATCACAGATGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCTTATAGAAGATTGTGCTGGAGTCAAGGGTGACGACTCAGAAATTGTCCTTGACCTGTTTTGTGGAACAGGCACCATAGGTCTGACGCTTGCAAGAAGgtaatctttgatctccatctggttttagtattttaggataaactgtgaagcaatgagattaatttcttgtcttccaattctgaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG